PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028431.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 1720aa MW: 188607 Da PI: 5.9303

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028431.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	802	843	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + + +G++ +++Ia+ + +++ +c+++++k CCG028431.1 802 PWTSDEKEIFMHKLATFGKD-FRKIASFLD-HKSTADCVEFYYK 843 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.9	6.2e-10	1011	1051	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I++ + +Rt+ qck ++ CCG028431.1 1011 DWTDEEKSIFIQAVSSYGKD-FEMISQVVR-TRTRDQCKVFFS 1051 5***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-13	786	846	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-4	794	844	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.933	798	849	IPR017884	SANT domain
SMART	SM00717	6.6E-7	799	847	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.843	1007	1058	IPR017884	SANT domain
SMART	SM00717	6.6E-9	1008	1056	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.94E-11	1009	1058	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-6	1011	1052	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-8	1011	1051	IPR001005	SANT/Myb domain
CDD	cd00167	1.87E-7	1012	1050	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1720 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSESTSSSFG GGSTPRWREF PFTSANNYGS PRDFNRWGPH 60 DFRRPPGHGK QGGWHMLAEE SGHVFSPYRL SDKMLEDENC QLFSRGDGRY GRNNRENRGH 120 ASQRDWRGGH SWEMINGSPN MPGRQHDVNN DQRSVDEMLM YRPSHPAHSD FVNSWDQHQL 180 KDQDDNNKMG GVVGLGTGQR GDREIPLDWK PLKWTRSGSL SSRGSGFSHS SSSKSLGGAD 240 SNEGKTEWQP KNATPVQSPS VDVAACVTSV ALSEEISSRK KARLGWGEGL AKYEKKKVEG 300 PDASENKDGA AISASNMESI HFQTSNMADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK 360 TFLKSTNADN VAINLCGSPS VGSQSHIEGL SFNLEKMDVS SIANLGSSLA ELLQSDDPSS 420 MDSGFVRSIA MNKVLVWKGD ISKALELTES EIDSLENELK SMKFEYGSRC PWPAASSPLF 480 VSDVKPCSVH GGSSNSVPRP SPLQVASRGD GIVEKVSLCN GGLEVHGDVK DDDIDSPGTA 540 TSKLVEPVCL LRKDSSTVAL ENDFDVIQSA RMDLKGPVPC ADDEKTGVFA CKDVISSGDV 600 ISETNGEDNL CSLILASNKE SASGASEVFN KLFPSDQCKF DFSCVTNGSS WQSGDLVVEK 660 IAKKKRLLRF KETAVTLKFK AFQHLWKEEM RLPSIRKYPA KSQKKWEPSL RTTHSGYQKH 720 RSSIRARFSS PSGNLSLVPP TEILNFTSKL LSDSQVKPYR NALKMPALIL DKKEKMGSRF 780 ISSNGLVEDP YAVEKERAMI NPWTSDEKEI FMHKLATFGK DFRKIASFLD HKSTADCVEF 840 YYKNHKADCF EKTKKSKQTK SSTNYLMASS TKWNRELNAA SLDILGVASW IAADADHAMN 900 SQQLCSGRIF SRGYHNSKIT EGDDGILERS SSFDVLGNER ETVAADVLGS LSSEAMGSCI 960 TTSVDLMEGY REQKCQKVDS VAKAPLISDV MENFDEETCS DESCGEMDPT DWTDEEKSIF 1020 IQAVSSYGKD FEMISQVVRT RTRDQCKVFF SKARKCLGLD LMHPGPRKSR TSLSDNANGG 1080 GSDTEDACAM ETGSAICSDK LDSKIDEDLP STIMNTEHDE SDAEEMIGLD EDLNGTEGNN 1140 ACGMLDKNDS RVVDEMVSDP SEAGQSADQA FDVDSKFTNT VNRTEPVQDQ KMLIASANAE 1200 SERDQVADNG VSVVKSLSVV GAVDVSTSNT NTAVELKGVV EVSVNGLQNG FTEQELFLPE 1260 NSLGSPSGLM QDSTSNASRH PVHMDSCSEF SCSLENMHQV SVQLESVEKP PVISLPQENN 1320 LALTNSILQD SAVIQFEKRH KQDTLQESSR DKQGKISVSG DDYFQHLSDH PLLNHNESSQ 1380 IPQGYSLQIP TKKEMNGVIS GRLLSGAQSL PNSEKNVTSQ SEAQECYLQK CSSLKAQHSV 1440 PELPFISQRR GRGSDHLRNH SRRSSDAEKP CRNGDVKLFG KILSNPLQKQ NSSARENGEK 1500 ESQHLKPTSK SATFKFTGHR PTEGNMALPK CDPNNQPGLE NVPMRSYGFW DGNRIQTGFP 1560 SMPDSATLLV KYPAAFSNYH VSSSKMPQQT LQAAVKSNEC NLNGISVFPS REITGSNGVV 1620 DYQMYRSHDS TGVPSFTVDM KQREVILAEM QRLNGQQTKG MAGVNVVGRG GILVGGACTG 1680 VSDPVAAIKR HYAKADQYGG QSGIVFREEE SWRGKGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1720 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSESTSSSFG GGSTPRWREF PFTSANNYGS PRDFNRWGPH  60
DFRRPPGHGK QGGWHMLAEE SGHVFSPYRL SDKMLEDENC QLFSRGDGRY GRNNRENRGH  120
ASQRDWRGGH SWEMINGSPN MPGRQHDVNN DQRSVDEMLM YRPSHPAHSD FVNSWDQHQL  180
KDQDDNNKMG GVVGLGTGQR GDREIPLDWK PLKWTRSGSL SSRGSGFSHS SSSKSLGGAD  240
SNEGKTEWQP KNATPVQSPS VDVAACVTSV ALSEEISSRK KARLGWGEGL AKYEKKKVEG  300
PDASENKDGA AISASNMESI HFQTSNMADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK  360
TFLKSTNADN VAINLCGSPS VGSQSHIEGL SFNLEKMDVS SIANLGSSLA ELLQSDDPSS  420
MDSGFVRSIA MNKVLVWKGD ISKALELTES EIDSLENELK SMKFEYGSRC PWPAASSPLF  480
VSDVKPCSVH GGSSNSVPRP SPLQVASRGD GIVEKVSLCN GGLEVHGDVK DDDIDSPGTA  540
TSKLVEPVCL LRKDSSTVAL ENDFDVIQSA RMDLKGPVPC ADDEKTGVFA CKDVISSGDV  600
ISETNGEDNL CSLILASNKE SASGASEVFN KLFPSDQCKF DFSCVTNGSS WQSGDLVVEK  660
IAKKKRLLRF KETAVTLKFK AFQHLWKEEM RLPSIRKYPA KSQKKWEPSL RTTHSGYQKH  720
RSSIRARFSS PSGNLSLVPP TEILNFTSKL LSDSQVKPYR NALKMPALIL DKKEKMGSRF  780
ISSNGLVEDP YAVEKERAMI NPWTSDEKEI FMHKLATFGK DFRKIASFLD HKSTADCVEF  840
YYKNHKADCF EKTKKSKQTK SSTNYLMASS TKWNRELNAA SLDILGVASW IAADADHAMN  900
SQQLCSGRIF SRGYHNSKIT EGDDGILERS SSFDVLGNER ETVAADVLGS LSSEAMGSCI  960
TTSVDLMEGY REQKCQKVDS VAKAPLISDV MENFDEETCS DESCGEMDPT DWTDEEKSIF  1020
IQAVSSYGKD FEMISQVVRT RTRDQCKVFF SKARKCLGLD LMHPGPRKSR TSLSDNANGG  1080
GSDTEDACAM ETGSAICSDK LDSKIDEDLP STIMNTEHDE SDAEEMIGLD EDLNGTEGNN  1140
ACGMLDKNDS RVVDEMVSDP SEAGQSADQA FDVDSKFTNT VNRTEPVQDQ KMLIASANAE  1200
SERDQVADNG VSVVKSLSVV GAVDVSTSNT NTAVELKGVV EVSVNGLQNG FTEQELFLPE  1260
NSLGSPSGLM QDSTSNASRH PVHMDSCSEF SCSLENMHQV SVQLESVEKP PVISLPQENN  1320
LALTNSILQD SAVIQFEKRH KQDTLQESSR DKQGKISVSG DDYFQHLSDH PLLNHNESSQ  1380
IPQGYSLQIP TKKEMNGVIS GRLLSGAQSL PNSEKNVTSQ SEAQECYLQK CSSLKAQHSV  1440
PELPFISQRR GRGSDHLRNH SRRSSDAEKP CRNGDVKLFG KILSNPLQKQ NSSARENGEK  1500
ESQHLKPTSK SATFKFTGHR PTEGNMALPK CDPNNQPGLE NVPMRSYGFW DGNRIQTGFP  1560
SMPDSATLLV KYPAAFSNYH VSSSKMPQQT LQAAVKSNEC NLNGISVFPS REITGSNGVV  1620
DYQMYRSHDS TGVPSFTVDM KQREVILAEM QRLNGQQTKG MAGVNVVGRG GILVGGACTG  1680
VSDPVAAIKR HYAKADQYGG QSGIVFREEE SWRGKGDIGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040957.1	0.0	PREDICTED: uncharacterized protein LOC105137076 isoform X1
Refseq	XP_011040958.1	0.0	PREDICTED: uncharacterized protein LOC105137076 isoform X1
TrEMBL	B9HU46	0.0	B9HU46_POPTR; Uncharacterized protein
STRING	POPTR_0010s22670.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein