PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028356.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 388aa    MW: 43193.3 Da    PI: 7.2611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028356.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.7e-3257161199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  CCG028356.1  57 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKAWTFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGElGKDRL 154
                  89****************************66677899*************************************************77688999999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  CCG028356.1 155 YIDWRRR 161
                  9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4151168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-2954148IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-2655144No hitNo description
SMARTSM010196.1E-2357162IPR003340B3 DNA binding domain
PfamPF023621.9E-2957161IPR003340B3 DNA binding domain
PROSITE profilePS5086314.80457162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGSWLGNKYD QEDQDTSRFD ENGASTAAKL DLMDVNDDEE GGRGESSCVV IEKEHMFDKV  60
VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED RNGKAWTFRY SYWNSSQSYV  120
MTKGWSRFVK EKKLDAGDIV SFQRGAGELG KDRLYIDWRR RPDPPDHASH HQLYHHNHPF  180
SSIPWSPLLM RPPTAPILPR DHLHLSNPNR NAYYNVGGSY YGHGYGNYNN VVNPCSSSGS  240
VFYMRSSAVA AIEPNPQEVG MGMVQWQLGG GGVVEPVVYE SVPVVQGKAA AKKLRLFGVN  300
MDCPITDQSD NYDRKLSSTT TAAAATLPHN ATITLQPPPQ LASQSLQHPL HQLRLYRGTP  360
LPALPPSNTQ FLHKGKSSSS SMSLDLDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-65521623114B3 domain-containing transcription factor NGA1
5os9_B9e-65521623114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519550.0AC151955.2 Populus trichocarpa clone Pop1-041G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040641.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-73NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2K1YKK40.0A0A2K1YKK4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-68B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]