PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 105aa MW: 11652.3 Da PI: 9.252 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.7 | 5.5e-10 | 4 | 103 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+ltp d + lvlp + + +g e ++e+ g ++ + + sg++v+++GW + +++ gL++gD+v+F+ + + + CCG028232.1 4 FTKQLTPIDFERG--LVLPPSSNLAPlqhfQGAIEL--STIVESAAGtrlpDPVTIHC--STISGSFVFRRGWYDIARDVGLRSGDTVTFYQEVNGAA 95 6677766555543..777777633224545333233..35667777744444444444..88999**************************6655666 PP ..EEEEE- CS B3 91 elvvkvfr 98 ++++kv++ CCG028232.1 96 RFKLKVRN 103 66776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.51E-9 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-10 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.98E-8 | 3 | 103 | No hit | No description |
Pfam | PF02362 | 2.2E-7 | 4 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MEIFTKQLTP IDFERGLVLP PSSNLAPLQH FQGAIELSTI VESAAGTRLP DPVTIHCSTI 60 SGSFVFRRGW YDIARDVGLR SGDTVTFYQE VNGAARFKLK VRNAR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217036 | 1e-137 | AC217036.1 Populus trichocarpa clone POP039-B10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1R926 | 2e-61 | A0A2K1R926_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00200.1 | 2e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16212 | 2 | 2 |