PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028165.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 420aa MW: 46878.2 Da PI: 8.2239

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028165.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	326.2	6.3e-100	40	419	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 + lLl+cA++ ssg+l++a+a+L ++s l+s gd mqRlaa f+ ALa rl++ ++++ kal+ +++ ++ a lf ++P+l f++ + CCG028165.1 40 IYLLLKCAKHASSGNLHRADACLLEISVLSSILGDCMQRLAARFASALAIRLVKRWPGIHKALNQAQQP---KVDLDRAKLLFTRTFPYLSFAYAIIA 134 679**********************************************************999998...6667777888************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +++l a+++e+ +Hi+D++ + W+aLl+ +a+ p+gpp+l+iT v+ sk le++g+rL k Ae++gvpf+fn + +l +l+ ++++ CCG028165.1 135 KTLLHAMANERVIHIVDLGSGDSNLWVALLRGFANSPHGPPHLKITCVNG----SKAILEKLGQRLVKEAESVGVPFQFNS-INASLRELTKDMFKAG 227 **********************************************....9**********************.6999******** PP GRAS 198 pgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279 +gEala ++l+lh ll ++ + +++ ++L +++s+sP+++ vveqeadhn +++++rf e l+yysa+fds++a+l+++ CCG028165.1 228 SGEALAFVSILNLHVLLseddqvvahfgvnkSDGIKDCKQIGDFLTMIRSMSPTLLFVVEQEADHNLNRLVDRFGEGLSYYSAVFDSIDATLASNLas 325 *************************76444455558999********************************************9987555 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +er +E++ +grei+n+vaceg er+erhe++++W rl +aGFkpv++ ++ ++ak ++ +++++gy+ e+ l+++W++rpL++++aW+ CCG028165.1 326 DERLILEEM-FGREIENIVACEGLERIERHERYARWVVRLAQAGFKPVRFWHYSGEDAKQIMDTFGKNGYKTVIERTGLMICWRERPLYALTAWT 419 999999999.**********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.928	13	399	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-97	40	419	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MSSTTPLLKP DVTLSLTLSP SSPSPHDQTL KPEERGIRLI YLLLKCAKHA SSGNLHRADA 60 CLLEISVLSS ILGDCMQRLA ARFASALAIR LVKRWPGIHK ALNQAQQPKV DLDRAKLLFT 120 RTFPYLSFAY AIIAKTLLHA MANERVIHIV DLGSGDSNLW VALLRGFANS PHGPPHLKIT 180 CVNGSKAILE KLGQRLVKEA ESVGVPFQFN SINASLRELT KDMFKAGSGE ALAFVSILNL 240 HVLLSEDDQV VAHFGVNKSD GIKDCKQIGD FLTMIRSMSP TLLFVVEQEA DHNLNRLVDR 300 FGEGLSYYSA VFDSIDATLA SNLASDERLI LEEMFGREIE NIVACEGLER IERHERYARW 360 VVRLAQAGFK PVRFWHYSGE DAKQIMDTFG KNGYKTVIER TGLMICWRER PLYALTAWTC

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MSSTTPLLKP DVTLSLTLSP SSPSPHDQTL KPEERGIRLI YLLLKCAKHA SSGNLHRADA  60
CLLEISVLSS ILGDCMQRLA ARFASALAIR LVKRWPGIHK ALNQAQQPKV DLDRAKLLFT  120
RTFPYLSFAY AIIAKTLLHA MANERVIHIV DLGSGDSNLW VALLRGFANS PHGPPHLKIT  180
CVNGSKAILE KLGQRLVKEA ESVGVPFQFN SINASLRELT KDMFKAGSGE ALAFVSILNL  240
HVLLSEDDQV VAHFGVNKSD GIKDCKQIGD FLTMIRSMSP TLLFVVEQEA DHNLNRLVDR  300
FGEGLSYYSA VFDSIDATLA SNLASDERLI LEEMFGREIE NIVACEGLER IERHERYARW  360
VVRLAQAGFK PVRFWHYSGE DAKQIMDTFG KNGYKTVIER TGLMICWRER PLYALTAWTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-44	23	419	2	378	Protein SCARECROW
5b3h_D	7e-44	23	419	2	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024454953.1	0.0	scarecrow-like protein 3
TrEMBL	A0A2K2AXT2	0.0	A0A2K2AXT2_POPTR; Uncharacterized protein
STRING	POPTR_0004s21850.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15813	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-100	scarecrow-like 3