PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Nin-like | ||||||||
Protein Properties | Length: 958aa MW: 106451 Da PI: 7.1118 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.4 | 1.4e-28 | 627 | 677 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l+++F++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ CCG028138.1 627 EKTISLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 677 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.041 | 616 | 697 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.0E-25 | 629 | 677 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.68E-22 | 840 | 935 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.1E-22 | 848 | 930 | No hit | No description |
PROSITE profile | PS51745 | 22.491 | 849 | 932 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.0E-23 | 849 | 932 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.5E-15 | 850 | 931 | IPR000270 | PB1 domain |
CDD | cd06407 | 9.01E-43 | 850 | 931 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MDDGNGPNFI PDSAFENFSG TSMDLDFMDE LLYEGCWLET ANEFNFLQAG TISSSDLNDP 60 RQYFPLFEPN SSNSNVNSHQ ENYQGVDELG GIGSQNQNIR SLDQSGSFPD ESNELGRRLW 120 IAPTATGPSS PVRDRLMHAI GQVKECTKDR DVLIQIWVPV KKEGKNVLTT IGQPYLLDRK 180 CQSLASYRNV SKDFQFPADE DSKELVGLPG RVFLRELPEW TPDVRFFRGV EYLRKSHAKQ 240 LNIRGSLAVP VFERGSRTCL GVIEVVTTTR DISYRPDLEN VCKALEAVDL RSPQDFCPPR 300 LKASGCCITS TRDLKVCKEV CQAAAPEISK ILESVCKAHR LPLALAWAPC FREGKGGCRH 360 FDESYSYFIS LVNSAYFVAE RDDWGFYMAC SEQYLSFGQG IVGRAFATNK QCLSTDVAAF 420 SKTDYPLSHH AKMFGLHAAI AIPLQSSYAG SADFVLELFL PKDCRNTEEQ KQMSDILPIT 480 VQQACQSWHV IMDKELEETV NKKMVVASDE RFHKDESQKF ASSLFKDSSK AESSWIARTV 540 EAQQKGKGVS VSWDHTKEEP REEFKVKSQR GRTQDDRYHK QAFPAFGQFQ QNSGPKSSIE 600 AGTDSSSAGR HSLGSIKFGD KRRTKTEKTI SLEVLRQHFA GSLKDAAKSI GVCPTTLKRI 660 CRQHGITRWP SRKIKKVGHS LKKLQLVIDS VQGAEGAIQM GSFYATFPEL TSPNLSGNGG 720 LPSTKTDENF KQLNPQPESG IFSAAPSALK SRSSSWSHSS GSSICCSIGV KQDTTTNNGS 780 VSGDPLMIED HGDVLKRTHS DAELHALSRD ETKCLVRSQS HKTFGDLPSP KTLPPLPKSS 840 SRVIRDGGGF RVKATFGADK IRFTLQPNWG FRDLQQETAR RFNLDDISGI DLKYLDDDQE 900 WVLLTCDADL EECRDVYKLS EIHTIKISLH QPAQPHLGSS MESRGPHLGS SLGTGVPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040794.1 | 0.0 | PREDICTED: protein NLP2-like isoform X2 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | U5GKC2 | 0.0 | U5GKC2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s21550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1237 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |