PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 383aa MW: 43820.9 Da PI: 8.8157 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.4 | 6.4e-19 | 282 | 372 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ g s ++l+ ++g++W v++ yr+++ +++GW eF +n+L egD++vF+l ++++ l+v+vfr CCG028123.1 282 VLRPSYLYRGCIMYLPSGFAEKNlnG----LSGFMKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLKSRDVVLKVTVFR 372 78899******************643....34469999***********666665..5699*********************999888889999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0055 | 17 | 100 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.16E-13 | 20 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-14 | 22 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-10 | 23 | 98 | No hit | No description |
PROSITE profile | PS50863 | 8.374 | 24 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-25 | 271 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-25 | 273 | 372 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.49E-24 | 277 | 372 | No hit | No description |
SMART | SM01019 | 8.2E-22 | 279 | 374 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.775 | 279 | 374 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-17 | 282 | 372 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGTKYLILLW GKWSLTWFGF LQRIPDNFVK KFGHDLLGFV RLIVPGGHVS RIGLIKADEK 60 LWFHDGWQQF VERFAIHIGY FLIFQYEGNA IFNVHIFNLP TSEINYHSNS LSGKIYLAFE 120 ELEDDDSAAS SGTPTTQLMV NKSYNPPALQ NLLSGSKLNN CLNWGGEENM RLTKSANVSQ 180 VANESARNVF AQYNEHKNSQ EEVKLYSPDG ETPKLKKRGR KRLKVDPHEQ QLSSPNEDDG 240 EMRFRFYESA SARKRTVTAE ERERAMNAAK AYAPDNPYCR VVLRPSYLYR GCIMYLPSGF 300 AEKNLNGLSG FMKLQLPDGK QWPVRCLYRG GRAKFSQGWY EFTLENNLGE GDVCVFELLK 360 SRDVVLKVTV FRVLEDGGLM NHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-74 | 245 | 375 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-74 | 245 | 375 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005671.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-127 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2K2AUR8 | 0.0 | A0A2K2AUR8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-124 | B3 family protein |
Publications ? help Back to Top | |||
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