PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 407aa MW: 46273.9 Da PI: 8.9358 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.9 | 9e-14 | 25 | 111 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++ l+ + l +pkkf++++g + s tl+ + gr + v+l +k gr ++ kGW eFv+ +++g f+vF ++g+s+f +v++f+ CCG028122.1 25 MVASILQDKKLKIPKKFVNKYGDE--LSSVATLTVPCGRIYLVEL--QKVNGRLWFHKGWHEFVECYSIRVGYFLVFIYEGKSNF--NVHMFD 111 4455566677***********865..7779***************..9999*****************************99999..888876 PP | |||||||
2 | B3 | 62.5 | 6.8e-20 | 301 | 394 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f +l ps+v + +l +p +fa+++ + + ++ +tl+ ++g++W v++ + k+g+ l++GW eFv +n+L+egD+++F+l++ +e l+v vf CCG028122.1 301 FRVILRPSYVYRGFLLHIPSSFARTFlNTV-TG--FVTLQVSDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIHAKEIVLKVAVF 393 667899*****************9994333.33..599999**********..66666677*************************999998999998 PP - CS B3 98 r 98 r CCG028122.1 394 R 394 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-22 | 17 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-22 | 18 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.942 | 20 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-17 | 20 | 111 | No hit | No description |
SMART | SM01019 | 1.6E-12 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-10 | 24 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-26 | 293 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-25 | 294 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.22E-23 | 299 | 394 | No hit | No description |
SMART | SM01019 | 1.5E-18 | 301 | 396 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-18 | 301 | 394 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.185 | 301 | 396 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MSQAAVKPDG SDPPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SVATLTVPCG 60 RIYLVELQKV NGRLWFHKGW HEFVECYSIR VGYFLVFIYE GKSNFNVHMF DLTVSEIKNP 120 CSSLSQLQES SHDNPCLLPH EKDDGLEKIL GFRPPSPNVL SSITSKNCNE YIHCSWIQST 180 STASLEKPHV RTDAYNMRET FQSSRDIGTQ FNGMELTSTE DGAGSIIPGI TRKTRGRKRM 240 SENIEDVDKN ESLGIQNVKL KSTHVRNTSE ALTRRRRAVT PEEKERTIRA AHMFRSDNPF 300 FRVILRPSYV YRGFLLHIPS SFARTFLNTV TGFVTLQVSD GKQWPVRCSF KDGKAKLGQG 360 WTEFVWENNL EEGDVCIFEL IHAKEIVLKV AVFRVLEDAA PTCQLAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-47 | 270 | 397 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-47 | 270 | 397 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454806.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | A0A2K2AUS2 | 0.0 | A0A2K2AUS2_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_033218m | 1e-132 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-84 | B3 family protein |