PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028121.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 402aa    MW: 45733.1 Da    PI: 9.3957
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028121.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1523114199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+  + ++lk + l++p+kfa+++g+  e s   ++  ++g sW++ l  +k  +++ + +GW +F + + ++ g  +vF + g s+f  +v +f+
  CCG028121.1  23 FFKII-TQSTLKDKKLRIPNKFARKFGE--ELSDVAKVVLPNGHSWQIGL--TKANNSVSFDDGWLQFLEHHSVCYGHLLVFGYRGCSNF--NVLIFD 113
                  77877.556666667***********94..588899999***********..999999*************************9775666..9*9999 PP

                  S CS
           B3  99 k 99 
                  k
  CCG028121.1 114 K 114
                  8 PP
2B358.98.8e-193093941199
                  HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +++ + +p +f ++h +g++     ++l+ ++gr+W ++l  +k++++ +++++GW+eF ++n LkegD++vF+l+++++ +l v++fr+
  CCG028121.1 309 YNKCFVAVPAEFSRRHlSGVS---EHIKLQVSDGRQWPLRL--NKTQRArMIISRGWNEFKRENSLKEGDVCVFELIKNKKISLQVSMFRA 394
                  5678899*********86663...359**************..766666699***************************9999***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2117117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2117117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-1521113No hitNo description
PROSITE profilePS5086312.36522115IPR003340B3 DNA binding domain
SMARTSM010199.0E-1323115IPR003340B3 DNA binding domain
PfamPF023622.1E-1123114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-23294393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21295393IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.115299395IPR003340B3 DNA binding domain
CDDcd100171.44E-18300393No hitNo description
SMARTSM010191.0E-17302395IPR003340B3 DNA binding domain
PfamPF023623.0E-17308394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAPRKEVQPT RSLQADQRPL WHFFKIITQS TLKDKKLRIP NKFARKFGEE LSDVAKVVLP  60
NGHSWQIGLT KANNSVSFDD GWLQFLEHHS VCYGHLLVFG YRGCSNFNVL IFDKTACEIP  120
YHRCRGGTGG GKINYDEKCS PYDLDVMKDE GTIESIDSQY FCALESGVSD EDAGESRQRH  180
PSRPPPSENN AQERPCFECS GDKRGKIPVK KEHIVVAELD DTDESKRRKL SKKCRFPRPH  240
GSLIDETKVN KGKSKTKFDE IDFSPRCGED TDIIVCGFAK ASEESKKAIH AARMFRPKNP  300
SFMVLLRSYN KCFVAVPAEF SRRHLSGVSE HIKLQVSDGR QWPLRLNKTQ RARMIISRGW  360
NEFKRENSLK EGDVCVFELI KNKKISLQVS MFRAVDGSGP SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-2628239429142B3 domain-containing transcription factor VRN1
4i1k_B3e-2628239429142B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005664.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011005665.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011005666.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2K2AUV80.0A0A2K2AUV8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-28B3 family protein