PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028041.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 336aa    MW: 37704.2 Da    PI: 4.8373
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028041.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-092793132155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yp+++++  LA+++gL+++q+ +WF N+R ++
  CCG028041.1 279 KWPYPTEADKVALAESTGLDQKQINNWFINQRKRH 313
                  569*****************************885 PP
2ELK30.76.8e-11233254122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK+ LlrKYsgy+++Lk+ Fs
  CCG028041.1 233 ELKDKLLRKYSGYISTLKHAFS 254
                  9*****************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-2296140IPR005540KNOX1
PfamPF037904.1E-2197135IPR005540KNOX1
SMARTSM012568.1E-26145196IPR005541KNOX2
PfamPF037913.8E-23149195IPR005541KNOX2
SMARTSM011882.6E-6233254IPR005539ELK domain
PROSITE profilePS512139.551233253IPR005539ELK domain
PfamPF037895.9E-10233254IPR005539ELK domain
PROSITE profilePS5007112.406253316IPR001356Homeobox domain
SMARTSM003891.0E-13255320IPR001356Homeobox domain
SuperFamilySSF466895.13E-19255329IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-27258317IPR009057Homeodomain-like
CDDcd000866.01E-14265317No hitNo description
PfamPF059202.7E-16273312IPR008422Homeobox KN domain
PROSITE patternPS000270291314IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMEELYGLQT TSSDYSLQVT SENMVAPVAN YYHPVGFTSP AGEPSFPVFR SEQMFCGSSV  60
SDAASMVAEL HQKQQQQQRG GVGDHSNSNN SEEVSCAIRA KIASHPLYPK LLEAYIDCQK  120
VGAPPEMAYL LDEIRLVNDV SKGTVASCLG ADPELDEFME TYCDILMKYK VDLSRPFDEA  180
TTFLNDIEAQ FNTLCNGPSR SQVYDEAAGS SDEDASGGGA DVLDSTRISE DRELKDKLLR  240
KYSGYISTLK HAFSKQKKKG KLPKEARQIL LNWWNIHNKW PYPTEADKVA LAESTGLDQK  300
QINNWFINQR KRHWKPSENM QFAVVDSLYG PFFMND
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040492.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ84JS61e-108KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2K1YAY90.0A0A2K1YAY9_POPTR; Uncharacterized protein
STRINGXP_002511373.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.11e-104KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]