PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027983.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 534aa    MW: 59936.8 Da    PI: 6.5612
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027983.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.51.4e-1071445331374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                  lv+lL++cAeav+ +d++ a+alL++l+  a   g+++qR+a++f+++L  rl+  ++  +  + + + +  +  s ++  al+l +e++P ++f+h+
  CCG027983.1 144 LVQLLIACAEAVACRDKSHASALLSELRSKALVFGSAFQRVASCFVQGLIDRLSFFQPLGAVGFVAPTMNIIDiaSGKKEEALRLVYEICPHIRFGHF 241
                  689**************************************************984443333333333333335688889999*************** PP

         GRAS  97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesg..............skeeleetgerLakfAeelgvp 175
                  +aN+ Ilea+e+e+ vH++D++++    +G QW  L+q+La+R+++pp  +Ri gvg                     ++ + +g+ L+++A+ +g++
  CCG027983.1 242 VANNSILEAFERESSVHVVDLGMTlglpHGHQWRLLIQSLAERAGKPPsLFRISGVGLCVDRfrppslfritgvglCVDRFRIIGDELEEYAKDMGIN 339
                  ********************98873333788*************88664567777777555466777777777777********************** PP

         GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                  +ef+v v ++le+l++e+++++++E+l+Vn++lqlh +++es    +   +v +++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl++
  CCG027983.1 340 LEFSV-VKSSLENLRPEDIKTSEDEVLVVNSILQLHCVVKESRGALN---SVFQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDT 433
                  ****9.799******************************88877777...8*********************************************** PP

         GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                   lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+ +p++  +++qak  l k k  dgy+v ee+g+lvlgWk++p++++
  CCG027983.1 434 MLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQVAPIK--MMAQAKQWLVKSKvCDGYTVVEEKGCLVLGWKSKPIIAA 529
                  *******************************************************96..688999999999989************************ PP

         GRAS 371 SaWr 374
                  S+W+
  CCG027983.1 530 SCWK 533
                  ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.704118514IPR005202Transcription factor GRAS
PfamPF035144.7E-105144533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAHSFLSREF NDEYISETSG LDLSLAAMAC YPYPYLPIFE NNVVSWMLPL PDETEDAKRI  60
KRSSSMVESI RSNGSSLYSG GSSICRSSST NSLNNIPKLH FRNHIWNYTQ RYHAAEVVEE  120
EAAAMINAEE GGNEEEGNAD GMRLVQLLIA CAEAVACRDK SHASALLSEL RSKALVFGSA  180
FQRVASCFVQ GLIDRLSFFQ PLGAVGFVAP TMNIIDIASG KKEEALRLVY EICPHIRFGH  240
FVANNSILEA FERESSVHVV DLGMTLGLPH GHQWRLLIQS LAERAGKPPS LFRISGVGLC  300
VDRFRPPSLF RITGVGLCVD RFRIIGDELE EYAKDMGINL EFSVVKSSLE NLRPEDIKTS  360
EDEVLVVNSI LQLHCVVKES RGALNSVFQI IHELSPKVLV LVEQDSSHNG PFFLGRFMEA  420
LHYYSAIFDS LDTMLPKYDT RRAKMEQFYF AEEIKNIVSC EGPARVERHE RVDQWRRRMS  480
RAGFQVAPIK MMAQAKQWLV KSKVCDGYTV VEEKGCLVLG WKSKPIIAAS CWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5715153226378Protein SCARECROW
5b3h_A1e-5715153225377Protein SCARECROW
5b3h_D1e-5715153225377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040510.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLB9I3M10.0B9I3M1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-78RGA-like 2