PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027930.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 728aa    MW: 79723.7 Da    PI: 5.6422
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027930.5genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.84.5e-973757275374
         GRAS   5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  + ++Ae +++g+  laq +Larl+++ + p g+p qR a+yf+eAL+  l+       +  + s  +  n + ++ a+k fse+sPil+f+ +t+Nqa
  CCG027930.5 375 ICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------NN-NNSIGTACNLIFKIGAYKSFSEISPILQFASFTCNQA 465
                  789*********************9989999*******************98......33.3333344689*************************** PP

         GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle.leeLrvkp 198
                  +lea++g er+H++Dfdi++G+QW++L+q+La R++g+pslRiT+++s++s+++ el  t+e+L+ fA+e+++pfe+++l  ++l++ + +  Lr+ +
  CCG027930.5 466 LLEAFDGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLRITAFASSSSHDELELGFTQENLKIFASEINMPFEIEILSLESLSSGSwPMPLRLTE 563
                  ********************************************************************************7777777642778***** PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  +E++aVnl +  ++ +      +s+ + vL++vk+l Pkv+v  ++ +d+++ sF++++ +a++ y+ l++sl+a    + ++ +k+Er+l+++ i++
  CCG027930.5 564 KEVIAVNLPVGSFSNY------PSTLPLVLRFVKQLLPKVMVSLDSGCDRSDLSFAHHVNHAIQSYTGLLESLDAV-NVNLDAVQKIERFLVQPGIEK 654
                  **********888877......445567*********************************************665.4566999************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   v  +++           Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ Lvs+SaWr
  CCG027930.5 655 TVLGRHSC-----PDRTPWRSLFLQSGFTPLTFSNFTESQAEYLVQRTPVRGFHVEKRQSSLVLCWQQKDLVSASAWR 727
                  **998886.....66779***********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.701345707IPR005202Transcription factor GRAS
PfamPF035141.6E-94375727IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MPIPFEDFQA KGLLGFSSSS SSSPDPFHQY HHKWQNNNRK ESCDFLVGSA EPTSVLDTTS  60
RQSPPTSSST LSSSQGGGGG GGGSSTDTTN GAAGDGGSSP SGHEKCGPQL GMEDWESVLS  120
GSPSQEQSIL RLIMGDIEDP SVGLNKLVQS GSRSQDMELN ASGFGVVDQV FGFEVPNMST  180
AIANLAVNHN NFDPSSIHGT SPDFPLVNLK ATTSFNIGCA VNQNPTPNLV LFTSGIDLLP  240
DLFQQHQQQA AFDQDEKPQI LNPGANINQN QHQFVQNPAM LLPLSYAQLE EHHNNLPSLS  300
PPPLKRLNTG SVGANHVPKV FDLRPPELFL PRQQQQNHQF QMTLQQRQGM ITKQKIASDE  360
LANQQQLQHA VINPICQAAE LIETGNPVLA QGILARLNHQ LSVPIGKPYQ RTAFYFKEAL  420
QLLLNMNNNN SIGTACNLIF KIGAYKSFSE ISPILQFASF TCNQALLEAF DGFERIHVVD  480
FDIGYGGQWA SLMQELALRN GGAPSLRITA FASSSSHDEL ELGFTQENLK IFASEINMPF  540
EIEILSLESL SSGSWPMPLR LTEKEVIAVN LPVGSFSNYP STLPLVLRFV KQLLPKVMVS  600
LDSGCDRSDL SFAHHVNHAI QSYTGLLESL DAVNVNLDAV QKIERFLVQP GIEKTVLGRH  660
SCPDRTPWRS LFLQSGFTPL TFSNFTESQA EYLVQRTPVR GFHVEKRQSS LVLCWQQKDL  720
VSASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3037772625378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017462.10.0PREDICTED: scarecrow-like protein 6 isoform X1
TrEMBLA0A2K2BIU30.0A0A2K2BIU3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-138GRAS family protein