PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027930.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 728aa MW: 79723.7 Da PI: 5.6422 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 316.8 | 4.5e-97 | 375 | 727 | 5 | 374 |
GRAS 5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + ++Ae +++g+ laq +Larl+++ + p g+p qR a+yf+eAL+ l+ + + s + n + ++ a+k fse+sPil+f+ +t+Nqa CCG027930.5 375 ICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------NN-NNSIGTACNLIFKIGAYKSFSEISPILQFASFTCNQA 465 789*********************9989999*******************98......33.3333344689*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle.leeLrvkp 198 +lea++g er+H++Dfdi++G+QW++L+q+La R++g+pslRiT+++s++s+++ el t+e+L+ fA+e+++pfe+++l ++l++ + + Lr+ + CCG027930.5 466 LLEAFDGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLRITAFASSSSHDELELGFTQENLKIFASEINMPFEIEILSLESLSSGSwPMPLRLTE 563 ********************************************************************************7777777642778***** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E++aVnl + ++ + +s+ + vL++vk+l Pkv+v ++ +d+++ sF++++ +a++ y+ l++sl+a + ++ +k+Er+l+++ i++ CCG027930.5 564 KEVIAVNLPVGSFSNY------PSTLPLVLRFVKQLLPKVMVSLDSGCDRSDLSFAHHVNHAIQSYTGLLESLDAV-NVNLDAVQKIERFLVQPGIEK 654 **********888877......445567*********************************************665.4566999************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v +++ Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ Lvs+SaWr CCG027930.5 655 TVLGRHSC-----PDRTPWRSLFLQSGFTPLTFSNFTESQAEYLVQRTPVRGFHVEKRQSSLVLCWQQKDLVSASAWR 727 **998886.....66779***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.701 | 345 | 707 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-94 | 375 | 727 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MPIPFEDFQA KGLLGFSSSS SSSPDPFHQY HHKWQNNNRK ESCDFLVGSA EPTSVLDTTS 60 RQSPPTSSST LSSSQGGGGG GGGSSTDTTN GAAGDGGSSP SGHEKCGPQL GMEDWESVLS 120 GSPSQEQSIL RLIMGDIEDP SVGLNKLVQS GSRSQDMELN ASGFGVVDQV FGFEVPNMST 180 AIANLAVNHN NFDPSSIHGT SPDFPLVNLK ATTSFNIGCA VNQNPTPNLV LFTSGIDLLP 240 DLFQQHQQQA AFDQDEKPQI LNPGANINQN QHQFVQNPAM LLPLSYAQLE EHHNNLPSLS 300 PPPLKRLNTG SVGANHVPKV FDLRPPELFL PRQQQQNHQF QMTLQQRQGM ITKQKIASDE 360 LANQQQLQHA VINPICQAAE LIETGNPVLA QGILARLNHQ LSVPIGKPYQ RTAFYFKEAL 420 QLLLNMNNNN SIGTACNLIF KIGAYKSFSE ISPILQFASF TCNQALLEAF DGFERIHVVD 480 FDIGYGGQWA SLMQELALRN GGAPSLRITA FASSSSHDEL ELGFTQENLK IFASEINMPF 540 EIEILSLESL SSGSWPMPLR LTEKEVIAVN LPVGSFSNYP STLPLVLRFV KQLLPKVMVS 600 LDSGCDRSDL SFAHHVNHAI QSYTGLLESL DAVNVNLDAV QKIERFLVQP GIEKTVLGRH 660 SCPDRTPWRS LFLQSGFTPL TFSNFTESQA EYLVQRTPVR GFHVEKRQSS LVLCWQQKDL 720 VSASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-30 | 377 | 726 | 25 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017462.1 | 0.0 | PREDICTED: scarecrow-like protein 6 isoform X1 | ||||
TrEMBL | A0A2K2BIU3 | 0.0 | A0A2K2BIU3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s14550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3183 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-138 | GRAS family protein |