PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027928.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 738aa MW: 81173.8 Da PI: 5.5154

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027928.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310	5.5e-95	381	736	4	373
GRAS 4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + ++Ae +++g+ laq +Larl+++ + p g+p qR a+yf+eAL+ l+ + + s + n + ++ a+k fse+sPil+f+++t+Nq CCG027928.1 381 PICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------NN-NNSIGTACNLIFKIGAYKSFSEISPILQFANFTCNQ 471 5789*******************9989999***************98......33.3333344689********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLr 195 a+lea+eg +r+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+ + el t+e+L+ fA+e+++pfe ++l ++l + + +L CCG027928.1 472 ALLEAFEGFQRIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFVSPSSHdeLELELGFTQENLRIFASEINMPFELEILSLESLGCGsGPMTLC 569 ***********************************************99555667779*****************888888873467788 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + +E++aVnl l ++ + +s+ + vL++vk+lsPkvvv ++ d+++ +F++++ +a++ y++l++sl+a + + +k+Er+l+++ CCG027928.1 570 TLDKEVIAVNLPLGFFSNY------PSTLPVVLRFVKQLSPKVVVSLDSGYDRSDLPFAHHINHAIQSYTSLLESLDAV-NVNLDVLQKIERFLVQPC 660 888******988887......444567*****************************************665.3466999******* PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 i+ +v ++ + Wr+ + ++GF+p+++s+++++qa++l+++ +++g++ve ++ slvl+W++r LvsvSaW CCG027928.1 661 IERMVLGRHGC----SDRTTPWRSLFLQSGFSPLTFSNFTESQAECLVQRAPVKGFHVEMKQSSLVLCWQQRDLVSVSAW 736 *998887....677789********************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.9	352	717	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-92	381	736	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
MKANPLPFED FQGKGLSDFS SSSSTASSPD PFYQHYHKWQ NNNSIESCGF LVGSTEPTSV 60 LDTISRQSPP TSSSTLSSSQ GGGAGGGGAS TETINGVAAA GGSSPSLDEK CGPQLGMEDW 120 ESVLSGSPSQ EQSILRLIMG DIEDPSVGLN KLVQSGSRSQ DMELNASGFG VVDQVFGFEV 180 PNMCTASANL AVNNNNIDPS SIHGTFLDFP LVNHKITRIV NIGCLLHQNP TPNPVLFTSG 240 TSLLPGLFQQ HQQQAAFDQD EKPQILNPWV ITNQNQHQFV QNPATLLPLS YPQLEEHHDN 300 LHFLSPPPLK RLNAGHVGAN YMPKLLDLRP PELFLPRQQQ QQHNHQFQMM QQQRQGMITK 360 QKIASDELAN QQQLQHAIIN PICQAAELIE TGNPVLAQGI LARLNHQLSV PIGKPYQRTA 420 FYFKEALQLL LNMNNNNSIG TACNLIFKIG AYKSFSEISP ILQFANFTCN QALLEAFEGF 480 QRIHVVDFDI GYGGQWASLM QELALRNGGA PSLKITAFVS PSSHDELELE LGFTQENLRI 540 FASEINMPFE LEILSLESLG CGSGPMTLCT LDKEVIAVNL PLGFFSNYPS TLPVVLRFVK 600 QLSPKVVVSL DSGYDRSDLP FAHHINHAIQ SYTSLLESLD AVNVNLDVLQ KIERFLVQPC 660 IERMVLGRHG CSDRTTPWRS LFLQSGFSPL TFSNFTESQA ECLVQRAPVK GFHVEMKQSS 720 LVLCWQQRDL VSVSAWSC

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

MKANPLPFED FQGKGLSDFS SSSSTASSPD PFYQHYHKWQ NNNSIESCGF LVGSTEPTSV  60
LDTISRQSPP TSSSTLSSSQ GGGAGGGGAS TETINGVAAA GGSSPSLDEK CGPQLGMEDW  120
ESVLSGSPSQ EQSILRLIMG DIEDPSVGLN KLVQSGSRSQ DMELNASGFG VVDQVFGFEV  180
PNMCTASANL AVNNNNIDPS SIHGTFLDFP LVNHKITRIV NIGCLLHQNP TPNPVLFTSG  240
TSLLPGLFQQ HQQQAAFDQD EKPQILNPWV ITNQNQHQFV QNPATLLPLS YPQLEEHHDN  300
LHFLSPPPLK RLNAGHVGAN YMPKLLDLRP PELFLPRQQQ QQHNHQFQMM QQQRQGMITK  360
QKIASDELAN QQQLQHAIIN PICQAAELIE TGNPVLAQGI LARLNHQLSV PIGKPYQRTA  420
FYFKEALQLL LNMNNNNSIG TACNLIFKIG AYKSFSEISP ILQFANFTCN QALLEAFEGF  480
QRIHVVDFDI GYGGQWASLM QELALRNGGA PSLKITAFVS PSSHDELELE LGFTQENLRI  540
FASEINMPFE LEILSLESLG CGSGPMTLCT LDKEVIAVNL PLGFFSNYPS TLPVVLRFVK  600
QLSPKVVVSL DSGYDRSDLP FAHHINHAIQ SYTSLLESLD AVNVNLDVLQ KIERFLVQPC  660
IERMVLGRHG CSDRTTPWRS LFLQSGFSPL TFSNFTESQA ECLVQRAPVK GFHVEMKQSS  720
LVLCWQQRDL VSVSAWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-34	393	736	18	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017458.1	0.0	PREDICTED: scarecrow-like protein 22
Swissprot	O81316	1e-141	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2K2BIS9	0.0	A0A2K2BIS9_POPTR; Uncharacterized protein
STRING	POPTR_0002s14550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-140	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]