PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027884.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 361aa    MW: 40135.5 Da    PI: 10.2046
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027884.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.46.8e-2245136187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                  +Wt +e+ aLi+a+r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++a
  CCG027884.1  45 CWTPDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVarrcPDASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFTSSWVHFKRMDA 136
                  8**********************************999655556667899************************97799***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2344137No hitNo description
PROSITE profilePS500906.22646106IPR017877Myb-like domain
SMARTSM005956.5E-1553142IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSAPIKTGSP SSPQDLTPLQ TTAQQTLPAP PTHPSTNPRR LPPPCWTPDE TVALIDAYRD  60
KWYTLRRGNL KANHWQEVAD AVARRCPDAS PPKTAVQCRH KMEKLRKRYR TEIQRARSMP  120
VSRFTSSWVH FKRMDAMEKG PQAKADYNSE SEGDDNEDDG DIRGSNLENC RNAKNFMNTR  180
SIQKLYGNGI GNPGNGGDNN VLSGGNSSLG SGNAGGFRIR IPTGVSIAQP GPKFYAKTEQ  240
KHGGSPNMGV NASPDPYPKP KYGGGVGTSS RVTRGSEELA KKREREPMEE LVAAVKVLGD  300
GFVRMEQMKM EMARDMETMR MEMEMKRTEM ILDSQQRIVE AFAKALLEKK KRPKRMPSPE  360
S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2772200.0GU277220.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2772220.0GU277222.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017396.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLB9GP790.0B9GP79_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-58Trihelix family protein