PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 264aa MW: 27660.3 Da PI: 6.4934 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.7 | 9e-37 | 27 | 86 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprC+st tkfCy+nny+lsqPryfCk+CrryWtkGG+lr+vPvGgg+rkn k+s CCG027803.1 27 TEPLPCPRCNSTITKFCYFNNYNLSQPRYFCKSCRRYWTKGGTLRDVPVGGGSRKNSKRS 86 67899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.9E-32 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.584 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-19 | 34 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MPSEISQTRP NEAQNTMGTA PPPPKTTEPL PCPRCNSTIT KFCYFNNYNL SQPRYFCKSC 60 RRYWTKGGTL RDVPVGGGSR KNSKRSRTSS NNSSPSTSSS NSTASNPATL TAFTAIHEPE 120 SIPVAVSSTT DSGAAAVKTE MPAGINLNEG LAENGNFISL ITSNDQHGFN GLGGYGYGSG 180 FGLGPCEVGH GFGARGFWSF PGMENVSVNG ETMGGCTSGC NTWQLQGDHV EGGGNQDGFA 240 ADGENYFGSW PGLVISAPAE KGLN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146942 | 0.0 | EF146942.1 Populus trichocarpa clone WS01225_E04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017255.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A9PF29 | 1e-150 | A9PF29_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s13100.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 3e-28 | Dof family protein |