PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 269aa MW: 30038 Da PI: 6.8779 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3.2e-18 | 124 | 178 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ +++++ +++ LA++l+L rqV vWFqNrRa+ k CCG027654.1 124 RKKLRLTKEQSVILEDNFKDHSTLNPKQKLVLAEQLNLRPRQVEVWFQNRRARSK 178 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.3 | 2e-38 | 124 | 212 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+ +LE++F+ +++L+p++K la++L+l+prqv+vWFqnrRAR k+kq+E+d+e Lk+++++l+ en+rL+ke +eL+ + CCG027654.1 124 RKKLRLTKEQSVILEDNFKDHSTLNPKQKLVLAEQLNLRPRQVEVWFQNRRARSKLKQTEVDCELLKKCCETLTLENKRLQKELQELK-S 212 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.649 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-16 | 122 | 184 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 122 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.44E-15 | 123 | 181 | No hit | No description |
Pfam | PF00046 | 1.0E-15 | 124 | 178 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-17 | 124 | 178 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 155 | 178 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.9E-21 | 180 | 223 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.0E-8 | 180 | 213 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MMGFGTTDDL CNTGLGLGLG SFHTEQENCS QSHHLFQPIR KDKLALKYDL LLPSLTLGPS 60 EDVYRSITKK TDADLQPQAS SLSAVSSFSN SSIKKEREFG IGEEVDVERV SSRLSDEDEE 120 GSPRKKLRLT KEQSVILEDN FKDHSTLNPK QKLVLAEQLN LRPRQVEVWF QNRRARSKLK 180 QTEVDCELLK KCCETLTLEN KRLQKELQEL KSLKLASPVY MQLPAATLTM CPSCERICSG 240 SDQGSSASTF TVGPKPNFYN PDTNSSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 180 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017057.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 2e-83 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | B9GNK2 | 1e-180 | B9GNK2_POPTR; HD-ZIP family protein | ||||
STRING | POPTR_0002s11410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-68 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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