PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027540.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30655.2 Da    PI: 6.8664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027540.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-1857110356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ Fe ++++  e++ +LA +lg++ rqV +WFqNrRa++k
  CCG027540.1  57 KKRRLNLHQVKALEKNFEVENKLEPEKKLKLAGELGMQPRQVAIWFQNRRARWK 110
                  4557899**********************************************9 PP
2HD-ZIP_I/II120.77.5e-3956148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ +qvk+LE++Fe e+kLepe+K +la eLg+qprqva+WFqnrRAR+ktkqlE+dy  Lk++y+alk + ++Le+++e L++++ke
  CCG027540.1  56 EKKRRLNLHQVKALEKNFEVENKLEPEKKLKLAGELGMQPRQVAIWFQNRRARWKTKQLERDYGILKANYEALKLDYSNLEQKNEVLAQKVKE 148
                  69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.22E-1840114IPR009057Homeodomain-like
PROSITE profilePS5007116.29352112IPR001356Homeobox domain
SMARTSM003893.5E-1655116IPR001356Homeobox domain
PfamPF000463.4E-1557110IPR001356Homeobox domain
CDDcd000867.00E-1457113No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1860118IPR009057Homeodomain-like
PRINTSPR000315.6E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000315.6E-592108IPR000047Helix-turn-helix motif
PfamPF021831.3E-14112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKRFNSSDPL AAFISISSSK EERTEKTNQG YSRGFQSMLD SLEEEDYSEA ASHVGEKKRR  60
LNLHQVKALE KNFEVENKLE PEKKLKLAGE LGMQPRQVAI WFQNRRARWK TKQLERDYGI  120
LKANYEALKL DYSNLEQKNE VLAQKVKELK AKLSEENVDS SHSVKEEHRV SESDNNASVH  180
CKNRDFSGNN NPSAITKDHS NISSSHELMN LFQLSDSRVI LGNIYQVYQP HLMKPEEQSL  240
FSTEESCNFF SVDQAPTLHR YFPEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016852.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLB9GUZ90.0B9GUZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-48homeobox protein 16