PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027514.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 1275aa MW: 139472 Da PI: 4.8162

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027514.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	426	448	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+ F +++L +H+ +H CCG027514.1 426 YKCHKCTLAFDKQDDLLQHLLSH 448 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	9.974	300	373	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	5.56E-8	306	355	IPR016177	DNA-binding domain
Pfam	PF01429	3.8E-6	309	354	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	2.5E-4	310	354	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50157	9.577	426	453	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	426	448	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	428	448	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.286	472	499	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.4	472	494	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	474	494	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1275 aa Download sequence Send to blast
MATATVDSSI CDLQNHPRTE SLPLIDLRHL SQSELLSLSL CSSSSHRLRT DTADVSTPKI 60 DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVVPF QNTERQPLDE ENSQIIYLLK 120 SLFGSDSNSI ENKNEHYQKL VSVPVIYNDY MRLPSTNNAE SQNVSIDIWD SSQGGVKRLE 180 VSHSISIRAA ESSSKKRKRG RPRKNENVNF DNNDNSELVE NKTIAVACDN VEVESKKKEE 240 MVMVNKNGVV VDSAALGNME DPYGEELRRR TEGMQLKAEF LGFLEGFEGE WGSMRKKRRI 300 VNASLFGDVL PIGWKLSICI KKQAGRVWLA CTRYISPNGQ QFVSCKEVSS YLLSFSGLHD 360 GSRLNFGHMD GMIKLTNKIT HSIPADHTCK DGKNENDFIS YMALPVTCRS IETGGCPVEV 420 QMGNKYKCHK CTLAFDKQDD LLQHLLSHQQ APKQLRFEAS TDEEVIIKNG KYECQFCHKL 480 FEERHRFNGH LGNHIKEYLK RLDASNGKTT GKSDEPALVK IPPGAGKIQT WIEFDRDSDA 540 ITVNTKISDE INSTIPYCEL KAITSVETHC CELDRVFISS NDGAGKMNED TDAVAAENRV 600 SSAPSLLNND IHRSSDETDV PKCPTNGTGD LGRKDKSFKN CSVAGGARDV TCIGHNNSNH 660 VSPRLIEELN QERDSNSGLL ASNAKENTSN DDIIEDRHCS SPIDNMVIDG WDIDGKGGPI 720 TGCCNSYAAM GGNAAVNLRE QTISEGRYVA DSESGLLTFD AVETMLEKGS KGGLTGIENN 780 MNSVCTGMLN ESRLDDVVKS GTNEITIVCC GDNTVLADDN VTSNEQGGNH GAGSVIPFLN 840 QHTHLVENTI TGAPKCIPRE PCQGKESEEC PITISGNEQL FDFESNVIKV SNGTIDVSSH 900 DKVGSEIDLV PQTLTSIKQE EISKTFTFAP FTNGFASKDC GISNSVLEKL EQGRNSGRRS 960 SDSEQSHDVK DIVNGLSFTT VEEDNQQEVK ISCNGELHIA SDDNCTEQDA DVGTGTVQKC 1020 SLFAGSQLAF TAKDNPTGPY SGAVDELKQK MDSVESVVCP SGSEPVWSVE KNLQTAFKGS 1080 VQEEPRVENS ENPRKDDSGI GFSSHPGPDE SDVISEFMWR NNEESNLLSD FADTSCQPVQ 1140 TSSIFPPYDA VSDKGESELF AEKFGATSGF EGLKLGGVDN MECNLLTSQV SSHSDESKVG 1200 TYDAVIPKGI ASSILLAKED LPFVPKDSSR HHVPAVCVWC GREICQEALE SEGQTSTMRF 1260 MCAGCTAKLS GQFNR

Sequence ? help Back to Top

Protein Sequence Length: 1275 aa Download sequence Send to blast

MATATVDSSI CDLQNHPRTE SLPLIDLRHL SQSELLSLSL CSSSSHRLRT DTADVSTPKI  60
DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVVPF QNTERQPLDE ENSQIIYLLK  120
SLFGSDSNSI ENKNEHYQKL VSVPVIYNDY MRLPSTNNAE SQNVSIDIWD SSQGGVKRLE  180
VSHSISIRAA ESSSKKRKRG RPRKNENVNF DNNDNSELVE NKTIAVACDN VEVESKKKEE  240
MVMVNKNGVV VDSAALGNME DPYGEELRRR TEGMQLKAEF LGFLEGFEGE WGSMRKKRRI  300
VNASLFGDVL PIGWKLSICI KKQAGRVWLA CTRYISPNGQ QFVSCKEVSS YLLSFSGLHD  360
GSRLNFGHMD GMIKLTNKIT HSIPADHTCK DGKNENDFIS YMALPVTCRS IETGGCPVEV  420
QMGNKYKCHK CTLAFDKQDD LLQHLLSHQQ APKQLRFEAS TDEEVIIKNG KYECQFCHKL  480
FEERHRFNGH LGNHIKEYLK RLDASNGKTT GKSDEPALVK IPPGAGKIQT WIEFDRDSDA  540
ITVNTKISDE INSTIPYCEL KAITSVETHC CELDRVFISS NDGAGKMNED TDAVAAENRV  600
SSAPSLLNND IHRSSDETDV PKCPTNGTGD LGRKDKSFKN CSVAGGARDV TCIGHNNSNH  660
VSPRLIEELN QERDSNSGLL ASNAKENTSN DDIIEDRHCS SPIDNMVIDG WDIDGKGGPI  720
TGCCNSYAAM GGNAAVNLRE QTISEGRYVA DSESGLLTFD AVETMLEKGS KGGLTGIENN  780
MNSVCTGMLN ESRLDDVVKS GTNEITIVCC GDNTVLADDN VTSNEQGGNH GAGSVIPFLN  840
QHTHLVENTI TGAPKCIPRE PCQGKESEEC PITISGNEQL FDFESNVIKV SNGTIDVSSH  900
DKVGSEIDLV PQTLTSIKQE EISKTFTFAP FTNGFASKDC GISNSVLEKL EQGRNSGRRS  960
SDSEQSHDVK DIVNGLSFTT VEEDNQQEVK ISCNGELHIA SDDNCTEQDA DVGTGTVQKC  1020
SLFAGSQLAF TAKDNPTGPY SGAVDELKQK MDSVESVVCP SGSEPVWSVE KNLQTAFKGS  1080
VQEEPRVENS ENPRKDDSGI GFSSHPGPDE SDVISEFMWR NNEESNLLSD FADTSCQPVQ  1140
TSSIFPPYDA VSDKGESELF AEKFGATSGF EGLKLGGVDN MECNLLTSQV SSHSDESKVG  1200
TYDAVIPKGI ASSILLAKED LPFVPKDSSR HHVPAVCVWC GREICQEALE SEGQTSTMRF  1260
MCAGCTAKLS GQFNR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016539.1	0.0	PREDICTED: uncharacterized protein LOC105120050
Refseq	XP_011016547.1	0.0	PREDICTED: uncharacterized protein LOC105120050
Refseq	XP_011016551.1	0.0	PREDICTED: uncharacterized protein LOC105120050
Refseq	XP_011016559.1	0.0	PREDICTED: uncharacterized protein LOC105120050
Refseq	XP_011016567.1	0.0	PREDICTED: uncharacterized protein LOC105120050
TrEMBL	B9GUW9	0.0	B9GUW9_POPTR; Uncharacterized protein
STRING	POPTR_0002s09790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19