PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16668.2 Da PI: 5.3391 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00024 | 37 | 143 | 5 | 49 |
HHHHHHHHHHHHHHHHHHHHCTSCCC.................................................................TTS-STC CS HLH 5 hnerErrRRdriNsafeeLrellPkas..............................................................kapskKlsK 40 +rE +RR+r +a++++ el P+++ ++ ++ CCG027357.1 37 ETIRESKRRKRCPTALDKIEELTPSNPnfsftfdtqfggnsqeptpkfgsfnlvastqervddtghcfyqsledeegdhqeevdrqqggVSEGGVVNV 134 579**********************6558888888887777666666666666666666666666666666666666666666655555444445555 PP HHHHHHHHH CS HLH 41 aeiLekAve 49 + iL++ ++ CCG027357.1 135 SKILRRSID 143 555555555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAEKNNIEKT SKSHDSSQGP PLLATSSSQK PKKEEHETIR ESKRRKRCPT ALDKIEELTP 60 SNPNFSFTFD TQFGGNSQEP TPKFGSFNLV ASTQERVDDT GHCFYQSLED EEGDHQEEVD 120 RQQGGVSEGG VVNVSKILRR SIDGIREVK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903650.1 | 1e-18 | vacuolar protein sorting-associated protein VTA1 homolog | ||||
TrEMBL | B9HDT2 | 5e-95 | B9HDT2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s03000.1 | 8e-96 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16020 | 2 | 2 |