PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027284.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 626aa    MW: 70987.7 Da    PI: 6.8045
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027284.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.11.5e-15101165271
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                  W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++    + +k+ 
  CCG027284.1 101 WSNDEVLALLRIRSSMETWFPEF-----PWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNSNINYNKNY 165
                  ********************998.....8*******************************9887777765 PP
2trihelix97.21.4e-30478565186
     trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++evlaLi++r ++ ++ ++   g++k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  CCG027284.1 478 RWPRDEVLALINLRCSTLHNNNEdkeGSAKAPLWERISQGMLESGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLS 565
                  8**************9888888623367*********************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171997154IPR001005SANT/Myb domain
PROSITE profilePS500906.20299152IPR017877Myb-like domain
PfamPF138373.6E-1099164No hitNo description
SMARTSM007170.56475540IPR001005SANT/Myb domain
PfamPF138373.7E-20477565No hitNo description
CDDcd122031.03E-23477545No hitNo description
PROSITE profilePS500906.411478538IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MFEGIPEQFH QFIASSTTSI PPPGLSFPLL QGSSNTTNFP SFYPYTSSSQ EVPLQPNLLH  60
PILHQGAPTN KDGEKQENNL VAMNMDQFER ERSMPELVNP WSNDEVLALL RIRSSMETWF  120
PEFPWEHVSR KLAELGFKRS AEKCKEKFEE ESRYFNSNIN YNKNYRASFS ELEEIYHGDQ  180
NPHQEVTAGE RNKRRDKPGT EDEEQDKRGQ NLEEETRIDQ TVGNQTDQDN NGKLALVEKS  240
KSNKRKREKK FEMFKRLCED IVNTMMAQQE EMHNKLLEDM VKRDEEKVAK EEARKKLEMD  300
RINKELELRA HEQALANDRQ ATLIRFLKKF TSSDSSVEIL GEKTAPDPVN VPNSSNASSS  360
SSLVLAQNPN PVSQTSNESQ LKTATSSAIA PDHQKSTSIL AKTNTSWTEN QEPQNPTSSL  420
APNIPQVPTT SSTLSVPAAP QNPNFLNSHS STSGPPNTLP SHNKVQAKST YKDDIGKRWP  480
RDEVLALINL RCSTLHNNNE DKEGSAKAPL WERISQGMLE SGYKRSAKRC KEKWENINKY  540
FRKTKDVNKK RSIDSRTCPY FHQLSTLYNQ GTLAAPDNRS ASPENRSSLP ETRHSSSSQN  600
GTSNSTLHVG DGEKNMVQVP PLDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249NKRKREKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005709.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLB9I5E10.0B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-89Trihelix family protein