PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027244.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 1167aa MW: 125248 Da PI: 4.2509

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027244.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.6e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg +F++++ rH r H CCG027244.1 62 YVCHKCGWPFPNPHPSARHRRAH 84 9*******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.829	62	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MTEGRMAGAC AVNHVVTVSH CVPYCMSTQT YTLSFSSSWK MDNQDPRKNP THTPGHESHG 60 VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE ETPLSALSDD DRGSDEDPKT 120 PSPKGLERGI NERGTGGVGS RSNRSEDDVF TDAIAEFPES GSSPVTGEHI RDVKEPGINL 180 EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVTN LPGSAQESSL DHGSNATIAS 240 TTRSLTDCRG EESDFEHSHD NGSSAWDSIP IKPETQTDAS QENKKSGTVE DLPDTDAKGN 300 EETKLDKQLL DVVVSTDDNA EDASEVASES QKMEDVTSQP VPAAEVLQLK EGGYTDDLAS 360 GMSLNDLSPE VNLVEPAHSS ISTAQIEGDT QEIDSAVYVN SAVSYDNKGE GNGNMHVLIL 420 PNDITVVADA ENMVKGFKDL EGWKLPQPVN MDSFEVSNNV KDSDLENNPQ GFNSKPLTED 480 TKVSASNMHV LNDNLEPKDG TSQHIVEELP DEAEADVAQR SEVSVTDVVT GDLEKSISVH 540 STVEDVPRDH CETSSLTSSV EHATKVISDT NTVVVPMDAE VRRTNLIGMD DTGNDEKDKI 600 ESSEVGENDK NKRNAKESFA ENRIPTSKHA SISSEQADQR NSELGDVKAA GLEEGKIERC 660 NVSEIVTEGD SVSGLGEENL LREPKTTPES AVNVESCFTL ENDINVCEGK LPQLASIPSE 720 QADQRNNVLG DVKSAGLEEG KIERCNVSEI VTEGDSVSGL GEENLLRGPK TTPESAVNVE 780 SCFISENDIN VCEGKLPQHE HTDIGGDLDP QESRKEPESN GMANQQVERA GEVSAAAESD 840 SGGDAEVLWK SSEDKMAREP LVSPSEPSSS LQNSSPVADN LAIDVLGVAS GNTTESLPHE 900 GDNNLVAQQV VASATDFSVD SISQTDSLEG HWGSVSVLST ISDIPAILDA EPLPSNGSQA 960 LSEAEKATLK KPIAASETEH ADKSDIFDPP SFMTLVEPRD VVNQKGASFE SQTTQDPQQP 1020 KAASVQAGWF PSITNVLNES QGRKKNEEII AKVTNWSTGD QCPSLRSPQH APLKSLLGEA 1080 SMETKSKKLN AKEIPVEKDG PAAKDNGALP KTVSSILAPQ EPVGEPAKEE ENAWSSPARY 1140 PADIKREKRK VKGRPYWAQF VCCSSVN

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MTEGRMAGAC AVNHVVTVSH CVPYCMSTQT YTLSFSSSWK MDNQDPRKNP THTPGHESHG  60
VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE ETPLSALSDD DRGSDEDPKT  120
PSPKGLERGI NERGTGGVGS RSNRSEDDVF TDAIAEFPES GSSPVTGEHI RDVKEPGINL  180
EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVTN LPGSAQESSL DHGSNATIAS  240
TTRSLTDCRG EESDFEHSHD NGSSAWDSIP IKPETQTDAS QENKKSGTVE DLPDTDAKGN  300
EETKLDKQLL DVVVSTDDNA EDASEVASES QKMEDVTSQP VPAAEVLQLK EGGYTDDLAS  360
GMSLNDLSPE VNLVEPAHSS ISTAQIEGDT QEIDSAVYVN SAVSYDNKGE GNGNMHVLIL  420
PNDITVVADA ENMVKGFKDL EGWKLPQPVN MDSFEVSNNV KDSDLENNPQ GFNSKPLTED  480
TKVSASNMHV LNDNLEPKDG TSQHIVEELP DEAEADVAQR SEVSVTDVVT GDLEKSISVH  540
STVEDVPRDH CETSSLTSSV EHATKVISDT NTVVVPMDAE VRRTNLIGMD DTGNDEKDKI  600
ESSEVGENDK NKRNAKESFA ENRIPTSKHA SISSEQADQR NSELGDVKAA GLEEGKIERC  660
NVSEIVTEGD SVSGLGEENL LREPKTTPES AVNVESCFTL ENDINVCEGK LPQLASIPSE  720
QADQRNNVLG DVKSAGLEEG KIERCNVSEI VTEGDSVSGL GEENLLRGPK TTPESAVNVE  780
SCFISENDIN VCEGKLPQHE HTDIGGDLDP QESRKEPESN GMANQQVERA GEVSAAAESD  840
SGGDAEVLWK SSEDKMAREP LVSPSEPSSS LQNSSPVADN LAIDVLGVAS GNTTESLPHE  900
GDNNLVAQQV VASATDFSVD SISQTDSLEG HWGSVSVLST ISDIPAILDA EPLPSNGSQA  960
LSEAEKATLK KPIAASETEH ADKSDIFDPP SFMTLVEPRD VVNQKGASFE SQTTQDPQQP  1020
KAASVQAGWF PSITNVLNES QGRKKNEEII AKVTNWSTGD QCPSLRSPQH APLKSLLGEA  1080
SMETKSKKLN AKEIPVEKDG PAAKDNGALP KTVSSILAPQ EPVGEPAKEE ENAWSSPARY  1140
PADIKREKRK VKGRPYWAQF VCCSSVN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214097	1e-124	AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006103.1	0.0	PREDICTED: uncharacterized protein LOC105112197 isoform X1
TrEMBL	A0A2I4KKX1	0.0	A0A2I4KKX1_POPTR; C2H2 family protein
STRING	POPTR_0014s14320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19