PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026877.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 261aa    MW: 27833.4 Da    PI: 8.8656
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026877.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69.1e-086590227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 k +lC+ +     Ck+Gd+C+FaHg+
  CCG026877.1 65 KSRLCNKYNTVEGCKFGDKCHFAHGE 90
                 6789999999999***********96 PP
2zf-CCCH352.4e-11228252126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C +f + G C +GdrC+FaHg
  CCG026877.1 228 FKTKICENFNK-GSCTFGDRCHFAHG 252
                  69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.394123IPR000571Zinc finger, CCCH-type
PfamPF1460821020No hitNo description
Gene3DG3DSA:4.10.1000.103.7E-136093IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-86293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816391IPR000571Zinc finger, CCCH-type
SMARTSM003560.00566390IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-56590IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.3E-14126206IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.5E-16134206IPR004088K Homology domain, type 1
SMARTSM003224.0E-11134204IPR004087K Homology domain
PROSITE profilePS5008414.131135199IPR004088K Homology domain, type 1
PfamPF000138.8E-11137200IPR004088K Homology domain, type 1
CDDcd001057.91E-14137199No hitNo description
Gene3DG3DSA:4.10.1000.102.5E-16225258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-8227257IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7227253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868227254IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-9228252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLLFCSTSGC PFGEGCHFLH YVPGGFKAVS QMLNVGGSPA LPPASRNQGV PTLSYQDRSS  60
PPSVKSRLCN KYNTVEGCKF GDKCHFAHGE WELGKASAAP SYEDPRAMGP IPGRMSRHME  120
HPHQGHGAAA SFGSSATTKI SIDASLAGAI IGKNGVNSKH ICRVTGAKLS IRDHEADPKK  180
RSIELEGSFD QISQASDMVR QLISNVGQAS GPPIKNQVMH SSGGSNNFKT KICENFNKGS  240
CTFGDRCHFA HGAEELRKSG M
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2396550.0FJ239655.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396560.0FJ239656.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396570.0FJ239657.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396580.0FJ239658.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396590.0FJ239659.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396600.0FJ239660.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396610.0FJ239661.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396620.0FJ239662.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396630.0FJ239663.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396640.0FJ239664.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396650.0FJ239665.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396660.0FJ239666.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396670.0FJ239667.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396680.0FJ239668.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396690.0FJ239669.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396700.0FJ239670.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396710.0FJ239671.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396720.0FJ239672.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396730.0FJ239673.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
GenBankFJ2396740.0FJ239674.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037920.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9GLM30.0B9GLM3_POPTR; C3H family protein
STRINGPOPTR_0001s05070.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-52C3H family protein