PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026833.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 325aa    MW: 37121.7 Da    PI: 8.2125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026833.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-05173192120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  CCG026833.1 173 FSCPLCFKTFNRYNNMQMHM 192
                  89*****************9 PP
2zf-C2H215.16.4e-05257279123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  k + ++H +++
  CCG026833.1 257 FMCRKCGKAFAVKGDWRTHEKNC 279
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66173200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-6239277No hitNo description
Gene3DG3DSA:3.30.160.605.1E-6253277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550257277IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADPYSNYFN GWYNFNHLHH LSASAPSSIS SLYASHGCNM YSDNNIIYDK SFIQSHSSSP  60
PSPPLREVLP LLSLSPTRHH EDQREYSSCS AMEVDKNKDR EESLYDDKTV TVALHLGLPR  120
LDSADLVSST EISSDNEEVS AVASGYQTCS RTLNKGQYWI PTPSQILIGP TQFSCPLCFK  180
TFNRYNNMQM HMWGHGSQYR KGPDSLRGTQ PTAMLRLPCY CCATGCINNI DHPRAKPLRD  240
FRTLQTHYKR KHGIKPFMCR KCGKAFAVKG DWRTHEKNCG KLWYCTCGSD FKHKRSLNDH  300
IKSFGYGHSA NDIDFFEEDV EYIRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037986.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ8W0311e-128ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2K2BR020.0A0A2K2BR02_POPTR; Uncharacterized protein
STRINGPOPTR_0003s20400.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]