PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 404aa MW: 45940.2 Da PI: 5.0214 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.2e-35 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k ye+++d+++++++sws+n++sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+ +l+++i+ CCG026694.1 14 FLAKAYEMVDDPSTDSIVSWSQNNKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPHLMKNIH 101 9***************************************************************9998.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k CCG026694.1 102 RRKP 105 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.72E-36 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.8E-63 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.6E-38 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.2E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MDESQGTSNS LPPFLAKAYE MVDDPSTDSI VSWSQNNKSF VVWNPPEFAR DLLPRFFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHLMKNI HRRKPVHSHS MQNLQGQGSN 120 LLTDSERQSM KDDIEKLKRE KQALILELQK QEQERKGFDM QIEGLKEKLQ QTECIQQTIV 180 SFVARVLPKP GLALNIMPQL EGQDRKRRLP RIGYLYSEAS NEDNQMVTSH ALSRENADSN 240 SVALLNMEQF EQLESSLTFW ENMVHDIGQT YNNSTIEMDD STSGAQSPAI SCVHLNVDFR 300 PKSPGIDMNS EPSAAAAPEP VSPKEQPAGT APTVATGVND VFWEQFLTEN PGSTNAQEVQ 360 SERKDSDGRK GEIKPVDPGK FWWNMRNVNN LTEQMGHLTP AERT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 4 | 103 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 4 | 103 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 4 | 103 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | DRKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013982 | 0.0 | KP013982.1 UNVERIFIED: Populus simonii heat shock transcription factor A4b3-like (HsfA4b3) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039379.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a | ||||
Swissprot | O49403 | 1e-140 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | B9I1G8 | 0.0 | B9I1G8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s06820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3568 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-139 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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