PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026680.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30884.2 Da    PI: 5.8521
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026680.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1857110356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t +q+++Le+ Fe ++++  e++ +LA++l L+ rqV +WFqNrRa++k
  CCG026680.1  57 KKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAIWFQNRRARWK 110
                  56689************************************************9 PP
2HD-ZIP_I/II119.91.3e-3856148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ +qvk+LE++Fe ++kL perK +la+eL lqprqva+WFqnrRAR+ktkqlE+dy++Lk++y+al+++ ++Le+++e+L++++ke
  CCG026680.1  56 EKKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAIWFQNRRARWKTKQLERDYSTLKANYEALNHDYSNLEQKNEALAQKVKE 148
                  69***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.69852112IPR001356Homeobox domain
SuperFamilySSF466893.21E-1854114IPR009057Homeodomain-like
SMARTSM003892.3E-1555116IPR001356Homeobox domain
CDDcd000861.64E-1457113No hitNo description
PfamPF000462.3E-1557110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1859119IPR009057Homeodomain-like
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PfamPF021834.2E-14112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKRFNSSDSF PAFISITSSK EDRTQNTNQG YSRDFQAMLD SLEEEDYIEE ANLGSEKKRR  60
LTLHQVKALE KNFEVDNKLV PERKLKLAEE LCLQPRQVAI WFQNRRARWK TKQLERDYST  120
LKANYEALNH DYSNLEQKNE ALAQKVKELK AKLREEIVDS SPSVKEEYHV SESDNNASVH  180
SQNHDFSENK NSSAVTKDHS NVSSSNELMN CFHLTDSRAI LGTRYQVYQP HLMKLEEQSL  240
FSVEETCNFF SVDQAPTLHC YFPEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009566.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLU5GG670.0U5GG67_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-57homeobox protein 16