PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026650.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 268aa    MW: 30734.3 Da    PI: 8.3924
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026650.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.72.1e-3155109358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +v+YkeCl+NhAas+Ggha DGCgEfmp  g+egt + l+CaACgCHRnFHRr+ +
  CCG026650.1  55 SVKYKECLRNHAASIGGHANDGCGEFMPR-GDEGTRDWLTCAACGCHRNFHRRQGS 109
                  699*************************9.999********************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-2956107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1756107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-2757107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.55758107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.6E-30181248IPR009057Homeodomain-like
SuperFamilySSF466891.64E-19182248IPR009057Homeodomain-like
TIGRFAMsTIGR015655.4E-27188244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDTSVVPYHR QRQQQQHKSE TEHDQDTDMA LQTKLPITTM NPNSKTTKDP YSISSVKYKE  60
CLRNHAASIG GHANDGCGEF MPRGDEGTRD WLTCAACGCH RNFHRRQGST KRQQQQKLLL  120
SPPPQTQQFL LYGAPTDINM KPVHDFISRP HEDDDDDLDD LDHDRRSETP ERGEGKGFMV  180
KNAGSNNKRF RTKFTQEQKE RMLEFAEKIG WRIQKHDDMA LNQFCNEIGV KRNVLKVWMH  240
NNKNAHRRRD GVPQASAEAP PPPPPVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-271862451675ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003997.10.0PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A3N7HD751e-156A0A3N7HD75_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11070.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-54homeobox protein 22