PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 346aa MW: 38011.7 Da PI: 6.5677 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.3 | 6.8e-35 | 20 | 121 | 2 | 93 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg........k 89 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+q +LG+d++sk+++WL+++ak +i+ l+++ +++ ++++++ ++++++ ss+ + CCG026590.1 20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQARLGYDRPSKAVDWLIKKAKNSIDRLAELppWQPTTNNVNENLEENQNAGSSEMaiaeepesS 117 79**************************************************************7644444445333333333323333454444432 PP TCP 90 aaks 93 ++ CCG026590.1 118 GYSF 121 2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-31 | 20 | 128 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.151 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MKNTGGEIIQ VQGGHIVRST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQARLGYD 60 RPSKAVDWLI KKAKNSIDRL AELPPWQPTT NNVNENLEEN QNAGSSEMAI AEEPESSGYS 120 FQLHGQLTDH NPSNGSSFLA PTIDPDTIPD TMRSFFPTSS ANSSMNFQSY PTVISRTANQ 180 SEDLGLSLHS FQDQVLLHGQ SQADTTHTPS TDQTLFEGSA PVGFDANFQR MMAWSNDTNA 240 DNRGAGGFTF NPPPLTPHQA MLAQGSAFSQ RGTLQSSFPI SIRAWNDLHM ASTDHHRAQE 300 LHQSLIFGSR FASEGLAGFS IPARIHGENE HNVVSDRPPS SPNSQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-21 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-21 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038215.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 4e-75 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A385JIR9 | 0.0 | A0A385JIR9_POPTO; TCP family transcription factor 4 | ||||
TrEMBL | B9MW22 | 0.0 | B9MW22_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s12370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-77 | TCP family protein |