PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026575.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 270aa    MW: 29506.7 Da    PI: 6.6625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026575.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-1374120354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+Er+RR+riN  +++Lr+l+P        K++Ka+ L +++ ++k+L
  CCG026575.1  74 RNHSEAERKRRARINAHLDTLRSLVPGT-----SKMDKASLLAEVISHLKEL 120
                  58*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.84471120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1474124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.78E-1374123No hitNo description
Gene3DG3DSA:4.10.280.109.0E-1475145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00105161204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEPCSWNSAR VQASACEGMS DVFLVNSGLQ AETRNWSRST SSLVLDNERG ELVEATVRME  60
RKGVSAEKSI AALRNHSEAE RKRRARINAH LDTLRSLVPG TSKMDKASLL AEVISHLKEL  120
KIQAAGAGEG LLMPLDIDEV RVEQEEEEDG LCSAPCLIRA SICCDYKPEI LSGLRQALDA  180
LHLMITRAEI ATLEGRMMNV LVVSSCKEGL GGDSKVRQFL AGSVHEAFRS VLDKFSASQE  240
FSLKPTLSNK RRRVALLQPF SSSSSGDLCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167661e-105AC216766.1 Populus trichocarpa clone POP029-O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038201.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLB9MW370.0B9MW37_POPTR; Uncharacterized protein
STRINGPOPTR_0013s12190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-28bHLH family protein