PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13812.8 Da PI: 8.0924 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 4 | 90 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l d+ + rl++p ++++ h g+ + ++l ++d+ g+ +++ ++ ++ vl+kGW++Fv gL++gD vv+++++++ CCG026345.1 4 FSKEL--TDTDVRFRLSFPTHCLQ-HldfAGN--NLVDLHVKDSCGELRVIRCLKrDGDYDKPVLSKGWRKFVAYYGLRVGDKVVLHREDDH 90 56777..455556789***99995.5577444..6789********99999994435555669************************76654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-13 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-13 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-15 | 3 | 102 | No hit | No description |
Pfam | PF02362 | 1.6E-7 | 6 | 91 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MQIFSKELTD TDVRFRLSFP THCLQHLDFA GNNLVDLHVK DSCGELRVIR CLKRDGDYDK 60 PVLSKGWRKF VAYYGLRVGD KVVLHREDDH NLGSQFRIEA KRSIMLFGEE AWGDVTRAN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210344 | 0.0 | AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452698.1 | 4e-83 | uncharacterized protein LOC18096619 | ||||
Refseq | XP_024452699.1 | 4e-83 | uncharacterized protein LOC112326842 | ||||
TrEMBL | A0A2K2B023 | 1e-81 | A0A2K2B023_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s01200.1 | 8e-72 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12594 | 4 | 14 |