PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 365aa MW: 40445.2 Da PI: 7.7609 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.4 | 1.9e-32 | 48 | 158 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ ++++ +sn+ + CCG026334.1 48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPGNFSLNHQEMLGSSNEVGAsrsskevfkmn 145 689*****************************************************************999966666665554333333323344444 PP TCP 89 ............k 89 + CCG026334.1 146 ngidwqdtsgftR 158 4444444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-29 | 50 | 188 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.469 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MITSSKQVDS PTKKEEDSND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPMPPGNFSL 120 NHQEMLGSSN EVGASRSSKE VFKMNNGIDW QDTSGFTRPS FWNADAILRA KSKEVVTDPA 180 NEKEKWAKRD EEDKEDGSIE GNTAQALSSS FLQRASHSSL PGLINNAMPY GSFFHLEPQS 240 FPLSHMGNHG FATQTGDIHN LNVEPLSSAL SLSSGSQILV CPPGTTQSYF PSHATASMEI 300 DPRQINHFQW LTPSTQNLLP NSLTPSPYSI SQSMRPSQYF SVTPRVLHSH NSESPPEKDP 360 QFPCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011009375.1 | 0.0 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
Refseq | XP_011009376.1 | 0.0 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
TrEMBL | B9H0G5 | 0.0 | B9H0G5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-50 | plastid transcription factor 1 |