PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026334.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 365aa    MW: 40445.2 Da    PI: 7.7609
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026334.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.41.9e-3248158289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 
                   g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ ++++   +sn+  +           
  CCG026334.1  48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPGNFSLNHQEMLGSSNEVGAsrsskevfkmn 145
                  689*****************************************************************999966666665554333333323344444 PP

          TCP  89 ............k 89 
                              +
  CCG026334.1 146 ngidwqdtsgftR 158
                  4444444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2950188IPR005333Transcription factor, TCP
PROSITE profilePS5136931.46950108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MITSSKQVDS PTKKEEDSND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPMPPGNFSL  120
NHQEMLGSSN EVGASRSSKE VFKMNNGIDW QDTSGFTRPS FWNADAILRA KSKEVVTDPA  180
NEKEKWAKRD EEDKEDGSIE GNTAQALSSS FLQRASHSSL PGLINNAMPY GSFFHLEPQS  240
FPLSHMGNHG FATQTGDIHN LNVEPLSSAL SLSSGSQILV CPPGTTQSYF PSHATASMEI  300
DPRQINHFQW LTPSTQNLLP NSLTPSPYSI SQSMRPSQYF SVTPRVLHSH NSESPPEKDP  360
QFPCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1855109155Putative transcription factor PCF6
5zkt_B8e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009375.10.0PREDICTED: transcription factor TCP13-like isoform X1
RefseqXP_011009376.10.0PREDICTED: transcription factor TCP13-like isoform X1
TrEMBLB9H0G50.0B9H0G5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-50plastid transcription factor 1