PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025835.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 431aa    MW: 48319.9 Da    PI: 6.2574
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025835.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41.1e-073714042154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  CCG025835.1 371 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 404
                  469*****************************87 PP
2ELK28.82.8e-10325346122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  CCG025835.1 325 ELKHELKQGYKEKIVDIREEIL 346
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.8E-20158202IPR005540KNOX1
PfamPF037908.0E-18160201IPR005540KNOX1
SMARTSM012563.7E-28213268IPR005541KNOX2
PfamPF037917.4E-20219267IPR005541KNOX2
SMARTSM011886.1E-4325346IPR005539ELK domain
PROSITE profilePS512139.969325345IPR005539ELK domain
PfamPF037891.0E-6325346IPR005539ELK domain
PROSITE profilePS5007111.693345408IPR001356Homeobox domain
SMARTSM003895.9E-11347412IPR001356Homeobox domain
SuperFamilySSF466894.71E-16347411IPR009057Homeodomain-like
CDDcd000862.49E-11348409No hitNo description
Gene3DG3DSA:1.10.10.607.1E-25352409IPR009057Homeodomain-like
PfamPF059201.2E-17365404IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAFHHNLPSQ DLPLHHFTDQ QATENTTAPP NWLNTALLRS QQPPPQQRTH HHFTDNNNTN  60
NFLNLHSAAP STTATTSDST SHNPTQWLSR SSSSLLNRNH SNVIDDVAAA AAGGDHPIIA  120
SMSQESSELK SMNKSEGETM VEESGGSGGE AVVNWQNAKF KADIMAHPLY DQLLSAHVAC  180
LRIATPVDQL PRIDAQLAQS QQVVAKYSAL GSHQGLVPDD KELDQFMTHY FLLLCSFKEQ  240
LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDDEDQVDSE VNMFDGSLEG  300
ADTMGFGPLV PTESERSLME RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTT  360
VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTVLKSKR  420
KRYFIEACIL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-12348413873Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401421RKRNWHSNPSSSTVLKSKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700200.0KP770020.1 Populus tomentosa TALE transcription factor (Potri.006G259400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039616.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
RefseqXP_011039619.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0F6V0900.0A0A0F6V090_POPTO; TALE transcription factor
STRINGPOPTR_0018s02210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-172KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]