PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 677aa MW: 74457.7 Da PI: 6.6243 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60.4 | 3.8e-19 | 197 | 240 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+ CCG025812.1 197 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTREN 240 79*******************.********************987 PP | |||||||
2 | Response_reg | 77.5 | 4.7e-26 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ + ll+++l++ +y +v++++++ al +l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + + Ga CCG025812.1 21 VLAVDDDPTCLLLLETLLRRCQY-NVTTTSQAITALSMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGAC 115 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + CCG025812.1 116 DYLLKPVRIEELKN 129 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.4E-150 | 1 | 666 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 4.13E-36 | 18 | 143 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-42 | 18 | 160 | No hit | No description |
SMART | SM00448 | 3.5E-32 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.241 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.6E-23 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.35E-23 | 22 | 135 | No hit | No description |
SuperFamily | SSF46689 | 6.09E-12 | 194 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-20 | 194 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-16 | 197 | 240 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MTVEQGIGDG NIDQFPIGMR VLAVDDDPTC LLLLETLLRR CQYNVTTTSQ AITALSMLRE 60 NKNKFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GDPKLVMKGI THGACDYLLK 120 PVRIEELKNI WQHVIRRRKC DNKDRNSSDN RDKPNQGSSE AIPDQKLNKK RKDQNEDEDE 180 DRDENEHENE DPATQKKPRV VWSVELHRKF VAAVNQLGID KAVPKKILDL MNVEKLTREN 240 KYRLYLKRIS TVANQQANMV AALGSSDASY LQMNSMNGMG LHNLAGSGQF HNTPFRSLPS 300 SGMLSRLNSP AVLGIRGLPS PGVIRLGHVQ SAPHSANGLS HFQPVGHPGN NGNILQGMPM 360 SLELDQIQSN KGVNYVRELP THLDDTATFP VSSGSTDMKI IAGSSNSPFA GVSGKPLVLE 420 GHGQGLQDGQ KFGNQSSLAA GSLDPGYSSH FPDHGRCNDN WSNAVQSNGV QSSSFTLNDC 480 FKQSTLHPSS IRDSMSTMAL QSRNNHCDVS SISTLPIHLQ DSKADLQCQV ATMNSDAGQI 540 INNGQLGWDD HRQDDPYHAN GMSNTINSAV PINGNGSLIG RSLDPNNMIF QRTRSFRSAG 600 QSNFVDSSLM KHNEVESSAM ETLVRSKDGY LLGQQKQQDS YVSNNFGSLE DLVSVMVKQA 660 SPPYPCLFLW RCLCFSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-19 | 195 | 250 | 3 | 64 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908144 | 0.0 | FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039588.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Refseq | XP_011039589.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Refseq | XP_011039590.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Swissprot | A2X1N2 | 1e-143 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2K2A8M0 | 0.0 | A0A2K2A8M0_POPTR; Two-component response regulator | ||||
STRING | POPTR_0006s27800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-119 | response regulator 12 |