PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025789.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family STAT
Protein Properties Length: 728aa    MW: 82750.6 Da    PI: 5.6199
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025789.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT1941.5e-602203371118
         STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 
                  ldvvllna++q+++k++e+vasL+yad+gl+vek+ d+e+pLL+s+dGvefs++drp kll+Gras+klkisqLsskcdnrLfr+k+eipk+  y+fl
  CCG025789.1 220 LDVVLLNAMSQAINKELEIVASLVYADNGLPVEKTFDDEDPLLTSCDGVEFSNYDRPGKLLHGRASLKLKISQLSSKCDNRLFRVKLEIPKFIGYHFL 317
                  8************************************************************************************************* PP

         STAT  99 eavskpirCisrsrntrsss 118
                  ea+s+pirCisrsrn r+s 
  CCG025789.1 318 EAFSHPIRCISRSRNPRTSL 337
                  ***************99764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2001.2E-510145IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.105.2E-6623693IPR000980SH2 domain
SuperFamilySSF555501.49E-8624711IPR000980SH2 domain
PROSITE profilePS500019.781630712IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MGSRNNNNNV INRKDYILLK DFRMEIEVEN EKDLSLSFWV YLIDSSTTTF PATIIKQVYP  60
DITSNAPFLV LNDKIITLFP LLHAHKETTN SSNSTSMEIK RPLENWIHVG FEVLTDIFRL  120
HINGEIVSEQ PQSSSLDKNW NSNGLRKIAL VGSCADDGLQ GYVYHAEVLP LSLSIKDHYV  180
KDPPLWLSID LSSTSEIDED NDGIWNIVGG KASCRRIFSL DVVLLNAMSQ AINKELEIVA  240
SLVYADNGLP VEKTFDDEDP LLTSCDGVEF SNYDRPGKLL HGRASLKLKI SQLSSKCDNR  300
LFRVKLEIPK FIGYHFLEAF SHPIRCISRS RNPRTSLTWK RPTSVAEPFN KSQSFGLYNG  360
SIELQHNSIH EIRPSPSSKR IKLGQQKTST MEKPDVECNS DAWITTQVEN APRIPLDRGA  420
ENVEEADNSP SVSDSIEERL SDINITSSSS YSISDVTIFK YCLGGLTDRA LLLKEVATSA  480
SEEELFRLAD EVSLYSGCSH HRRQIVIAKR LIEEGTKVWN SISQNNRLIH WENVIFEIEE  540
QFMRITCSST RSLTEKVAFS SPSCTHCEHT RTPCCYLHVE DFELLRRIAG CREYMAQENF  600
EKIWRWLYPV AFTLASDPIN TIWNSTSPKW IEGFITKEEA ELSLQGLRGL QEPGTFVLRF  660
PTSRSWPHPD AGSLIVTYVG SDYSVHHRLL SLDYIYSCEE RGMNLKSLEH MLLAEPELSR  720
LGRQDICF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080851e-138AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009095.10.0PREDICTED: uncharacterized protein LOC105114285 isoform X2
TrEMBLA0A2K1YI630.0A0A2K1YI63_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B