PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025767.4

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 271aa MW: 29923.7 Da PI: 9.1275

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025767.4	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.1	3e-20	115	164	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ ta+eAaka+++a+k+++g CCG025767.4 115 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTADEAAKAYDEAAKRIRG 164 69*****.******72....35**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	9.1E-38	115	178	IPR001471	AP2/ERF domain
Pfam	PF00847	3.9E-14	115	164	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-31	115	172	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.472	115	172	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.28E-22	115	173	IPR016177	DNA-binding domain
PRINTS	PR00367	6.1E-11	116	127	IPR001471	AP2/ERF domain
CDD	cd00018	5.09E-32	116	174	No hit	No description
PRINTS	PR00367	6.1E-11	138	154	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MCGGAIISDF VPVKRGRKPT TEDLWSELDS LSDFLGLDHR PMNNINNGSK KENLSNLKLA 60 QRPRQPNQGN QEYNLKLAQR PRQHNQVITE RVEKPSQATE QEAGKKKVQR TRKNVYRGIR 120 QRPWGKWAAE IRDPHKGVRV WLGTYNTADE AAKAYDEAAK RIRGDKAKLN FPPQPPPTSE 180 EAPPPTSEAA PPPTKKRCIL GPETAAMASY EQILSPEAFH GLEPKQTAAQ LSCDGGGGGG 240 GGGDYNCEPV DPWMLDDLIN VSLIISNIIN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-22	116	172	6	63	ATERF1
3gcc_A	8e-22	116	172	6	63	ATERF1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU282832	2e-68	GU282832.1 Populus balsamifera isolate STO11 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282833	2e-68	GU282833.1 Populus balsamifera isolate STO11 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282834	2e-68	GU282834.1 Populus balsamifera isolate GAL12 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282835	2e-68	GU282835.1 Populus balsamifera isolate GAL12 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282836	2e-68	GU282836.1 Populus balsamifera isolate RNA13 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282837	2e-68	GU282837.1 Populus balsamifera isolate RNA13 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282838	2e-68	GU282838.1 Populus balsamifera isolate NWL07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282839	2e-68	GU282839.1 Populus balsamifera isolate NWL07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282840	2e-68	GU282840.1 Populus balsamifera isolate FRE01 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282841	2e-68	GU282841.1 Populus balsamifera isolate FRE01 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282842	2e-68	GU282842.1 Populus balsamifera isolate HAY07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282843	2e-68	GU282843.1 Populus balsamifera isolate HAY07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282844	2e-68	GU282844.1 Populus balsamifera isolate INU03 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282845	2e-68	GU282845.1 Populus balsamifera isolate INU03 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282846	2e-68	GU282846.1 Populus balsamifera isolate KUU07 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282847	2e-68	GU282847.1 Populus balsamifera isolate KUU07 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282848	2e-68	GU282848.1 Populus balsamifera isolate LOV02 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282849	2e-68	GU282849.1 Populus balsamifera isolate LOV02 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282850	2e-68	GU282850.1 Populus balsamifera isolate STL13 haplotype A AP2 domain-containing protein RAP2.3 gene, partial sequence.
GenBank	GU282851	2e-68	GU282851.1 Populus balsamifera isolate STL13 haplotype B AP2 domain-containing protein RAP2.3 gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009081.1	1e-174	PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBL	A0A2K1YM03	1e-159	A0A2K1YM03_POPTR; Uncharacterized protein
STRING	POPTR_0010s00900.1	1e-160	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4892	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	3e-36	ethylene-responsive element binding protein