PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025755.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92538.9 Da    PI: 6.5033
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025755.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-192179357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++p+ ++r++L +++    +++ +q+kvWFqNrR +ek+
  CCG025755.2 21 KYVRYTPEQVEALERLYHECPKPTSTRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79
                 5679*****************************************************97 PP
2START180.97e-571663742205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++++++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W +++++++++++is++  g+++l +++
  CCG025755.2 166 IAEENLAQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVINAISTAngGTIELLYMQ 262
                  7899******************************************************.8888888888*****************999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  
  CCG025755.2 263 LYAPTTLAPaRDFLLLRYTSILEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLL 360
                  ****************************************99999***************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  CCG025755.2 361 AQKTTMAALRHLRQ 374
                  *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6941680IPR001356Homeobox domain
SMARTSM003892.0E-151884IPR001356Homeobox domain
CDDcd000862.02E-162181No hitNo description
SuperFamilySSF466897.27E-172184IPR009057Homeodomain-like
PfamPF000461.1E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182379IPR009057Homeodomain-like
CDDcd146861.15E-673112No hitNo description
PROSITE profilePS5084826.319156384IPR002913START domain
CDDcd088758.50E-80160375No hitNo description
SMARTSM002341.7E-43165375IPR002913START domain
Gene3DG3DSA:3.30.530.205.9E-24165371IPR023393START-like domain
SuperFamilySSF559612.47E-38165377No hitNo description
PfamPF018522.1E-54166374IPR002913START domain
PfamPF086706.2E-50699839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MMGVSSTCKD GSTRIAMDNG KYVRYTPEQV EALERLYHEC PKPTSTRRQQ LIRECPILSH  60
IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENGY  120
FRQQTQNATT LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEEN LAQFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPSWFRDCR  240
AVDVINAIST ANGGTIELLY MQLYAPTTLA PARDFLLLRY TSILEDGSLV VCERSLNNTQ  300
NGPSMPPTQH FVRAEMLPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL RPLYESSTLL  360
AQKTTMAALR HLRQISQEIS QPNVTGWGRR PAALRALSQR LSKGFNEAVN GFADEGWPLL  420
ESDGIDDVTV LVNSSPTKTM GVNFSYDNGF PSMNNAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADNGI DAYTASAIKA GPCSLPVSRA GNFGGQVILP LAHTIENEEF IEVIKLENMG  540
YREDMLMPGD VFLLQLCSGV DENAVGTCAE LIFAPIDASF SDDAPIIPSG FRIIPLDSGM  600
DASSPNRTLD LASSLEVGPA GNRASGDLSG RRGCTKSVMT IAFQFAFEMH LQENVASMAR  660
QYVRSIIASV QRVALALSPS HFGSHAGFWP PHGTPEAHTL ARWICESYRC YLGVKLLKNE  720
GSDSILKTLW HHSDALVCCS LKTLPVFTFS NQAGLDMLET TLVALQDITL EKIFDDNGRK  780
TLCSEFPQIM QQGFMCLPGG ICLSSMGRPV SYGRAVAWKV LNEEESAHCI CFMFMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196220.0AY919622.1 Populus trichocarpa class III HD-Zip protein 7 (HB7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006428.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
RefseqXP_011006429.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2K1WVS70.0A0A2K1WVS7_POPTR; HD-ZIP family protein
STRINGPOPTR_0018s08110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]