PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025690.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 661aa    MW: 71613.6 Da    PI: 8.3958
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025690.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.56.4e-14107146242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  + k+CnCk+s Clk+YCeCfaag +C+  C+C +C+N+ e+
  CCG025690.1 107 KPKQCNCKNSMCLKLYCECFAAGIHCNG-CNCLNCRNNVEN 146
                  5699************************.********9875 PP
2TCR482.5e-15191230140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgCnCk+s ClkkYCeCf+ + +Cse+CkC +CkN e
  CCG025690.1 191 KHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFE 230
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.3E-15106146IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.767107231IPR005172CRC domain
PfamPF036383.7E-11109143IPR005172CRC domain
SMARTSM011145.1E-18191232IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.7E-12194229IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEQSETVTEY TPKKLAPQKL DFTAPICRTA PANVPSQTQQ VQVNLQTQTP PRQEMLPPPF  60
QARPVSQHEA VAVAQRIPHP VHKISAMPRG KQDSPGSRLA NDGTPKKPKQ CNCKNSMCLK  120
LYCECFAAGI HCNGCNCLNC RNNVENEKER KEAVETTLQR NPNAFRPKIA SSPHGSQDTM  180
EDAQEVQMLG KHNKGCNCKR SGCLKKYCEC FQGNIFCSEN CKCLECKNFE GSDERRALFH  240
GSPHATAYAQ QATNAAISGA IGSSGYGTTL ASKKRKSEEL FGIATKDQSA HSNAKLSQGN  300
TLRNSAAFSS PLSVLVPRTA NGAVLGSTKP TYRSPLAGVL QPQFVKEICT LLVTISGKAT  360
EAVAGKEGKM DTRSERQNIE TYSASPTQEK ESSLKGWNAI EHMPDDCLNG NKAEKDRSID  420
SGDIENARPS SPDIDLMCHE EEMMFMEMGS PIGVARLCQS KTQKPDDGYE CSQLHAEQEK  480
IILTSFLGIL NRVSTYGSIK VCQSGNQKEP AVRDTVKTGI ETVNHRNGYH NRGATTLVLN  540
GDPPDKAASP VQKELTERST IKAGIQMGNH KAHHSNGTTQ SPVIANLAST VLPMKAASHV  600
QQESVERGTK TARNDIGNHS GYDNGTVKSP VLAPASNTDL PVKAASPVEN RERNPAGKSC  660
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3210524010132Protein lin-54 homolog
5fd3_B3e-3210524010132Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026609.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
TrEMBLA0A2K1WVJ10.0A0A2K1WVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-80Tesmin/TSO1-like CXC domain-containing protein