PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025580.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 258aa    MW: 30481.8 Da    PI: 6.7058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025580.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.81.1e-2821301128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ eP+dL+ ++ +a ++ e ++++kr+ +      ++ +  +g Wkat + k+v+++ 
  CCG025580.1   2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILEMNVYEREPQDLEwNQSTAlSNGERFYYCKREIND-----SREVLGRGWWKATSHVKKVYANd 92 
                  589************.88************.89**************9643333255699****998754.....3447889**************84 PP

          NAM  96 kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                  ++ lvg k+ L+f+     + +++++ kt+W+mhey+l
  CCG025580.1  93 HQLLVGNKRPLTFHrfkdnERNRNNAIKTNWIMHEYSL 130
                  5556**********7776546777889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.0462145IPR003441NAC domain
SuperFamilySSF1019413.66E-332145IPR003441NAC domain
PfamPF023651.4E-163130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILEMNVYE REPQDLEWNQ STALSNGERF  60
YYCKREINDS REVLGRGWWK ATSHVKKVYA NDHQLLVGNK RPLTFHRFKD NERNRNNAIK  120
TNWIMHEYSL ESRTTEWRLC KIKYKGKPSL QEEIESIKKQ HSSRNDFEAG SSTNAGTEQH  180
EEQTLVPADS TRPLDHYNGY DQRPHNQWNN MQQLPPSPYH PFLPALCTSS GHYYLNQQEE  240
LEPAVHEQPF PSLWSWAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-18215217171NO APICAL MERISTEM PROTEIN
1ut4_B3e-18215217171NO APICAL MERISTEM PROTEIN
1ut7_A3e-18215217171NO APICAL MERISTEM PROTEIN
1ut7_B3e-18215217171NO APICAL MERISTEM PROTEIN
3swm_A4e-18215220174NAC domain-containing protein 19
3swm_B4e-18215220174NAC domain-containing protein 19
3swm_C4e-18215220174NAC domain-containing protein 19
3swm_D4e-18215220174NAC domain-containing protein 19
3swp_A4e-18215220174NAC domain-containing protein 19
3swp_B4e-18215220174NAC domain-containing protein 19
3swp_C4e-18215220174NAC domain-containing protein 19
3swp_D4e-18215220174NAC domain-containing protein 19
4dul_A3e-18215217171NAC domain-containing protein 19
4dul_B3e-18215217171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2855422e-93GU285542.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855432e-93GU285543.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855442e-93GU285544.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855452e-93GU285545.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855462e-93GU285546.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855472e-93GU285547.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855482e-93GU285548.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855492e-93GU285549.1 Populus balsamifera isolate FBK13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855502e-93GU285550.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855512e-93GU285551.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855522e-93GU285552.1 Populus balsamifera isolate GIL14 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855532e-93GU285553.1 Populus balsamifera isolate GIL14 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855542e-93GU285554.1 Populus balsamifera isolate NWL07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855552e-93GU285555.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855562e-93GU285556.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855572e-93GU285557.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855582e-93GU285558.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855592e-93GU285559.1 Populus balsamifera isolate WHR03 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855602e-93GU285560.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855612e-93GU285561.1 Populus balsamifera isolate LOV02 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026397.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLB9HH640.0B9HH64_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15526612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-21NAC family protein