PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 31155.2 Da PI: 5.4438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.6e-18 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta++Aa a+++a+++++g CCG025536.1 78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYDAALAYDEAARAMYG 128 56*****999.**********8...2.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.91E-30 | 78 | 138 | No hit | No description |
Pfam | PF00847 | 3.4E-12 | 78 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.153 | 79 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-20 | 79 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-34 | 79 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGTLDQDSKA TPMPTDSTKK RKRVSNKSVA ETLKKWKEYN EYIDSQDDGG NRPVRKVPAK 60 GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYDAALAYD 120 EAARAMYGPY ARLNVPDVLN STSSSKDNFS SATPSCYSPA ASSADSATTS THSEVCVYED 180 PKQNVSGQAE VCGKDVSSQA EVLAHHISRQ QHIEDGSQAV ENSTLRDEQK SQSENPLWTP 240 SENSLGTDEW HNYSLDEIFS FDELLGGGID AGMMAAEGYF NLGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 79 | 136 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF567422 | 0.0 | EF567422.1 Populus euphratica DRE-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015329.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_011015336.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_011035867.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_011035869.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | B2KND8 | 0.0 | B2KND8_POPEU; DRE-binding protein | ||||
STRING | POPTR_0010s19100.1 | 1e-177 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 1e-35 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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