PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025414.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 449aa    MW: 49848.5 Da    PI: 7.2243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025414.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16139184147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
      CCG025414.1 139 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 184
                      899*****************************.***********996 PP
2Myb_DNA-binding57.92.3e-18191234146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
      CCG025414.1 191 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201134185IPR017930Myb domain
SMARTSM007173.3E-14138187IPR001005SANT/Myb domain
PfamPF002497.8E-16139184IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-28139232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-26140192IPR009057Homeodomain-like
CDDcd001674.38E-13142183No hitNo description
PROSITE profilePS5129426.278186240IPR017930Myb domain
SMARTSM007174.7E-15190238IPR001005SANT/Myb domain
PfamPF002493.4E-15191233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-21193239IPR009057Homeodomain-like
CDDcd001675.33E-12193233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MARKSVLYAT PYNNSRNVLA CYSSSASSSS SSSPCSSMGM VYTDIGSLSL SPNFGMTPPA  60
SSSHEMENGR LTWGFPLMGN YYASSDAVAE VKVSDCSDGF GENNETINHN ANSSHEENPN  120
ENMISGRETD SGQSKLCARG HWRPAEDTKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR  180
WFNQLDPRIN RKAFTEEEEE RLMQAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKF  240
REQSSAYRRR RLSQSVNRRM EEIPSFVGRD AGMKAEQPPC CLNIPSAGGL DNLSSCRIVN  300
FNGAGCGGVD NGFNGFPNMT SEGEAVSSIK VPQSGFCAQH TPFDFFFDPK SKDMLGMFSQ  360
TRSWDRPNEE PRISGFYPQH YPPYLMATQQ PNYQNPYCFS DFTASTLPKE VSVSQPSPSS  420
PSVADQSRVS GHFETVPPPF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-341392397107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013264.10.0PREDICTED: uncharacterized protein LOC105117338
TrEMBLA0A2K1YVD30.0A0A2K1YVD3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-77myb domain protein 105