PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025412.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MIKC_MADS

Protein Properties

Length: 430aa MW: 48019.3 Da PI: 6.5064

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025412.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.3	6.4e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR++gi+KKA+ELS+LCd+++ +++fs+tgk CCG025412.1 10 KLENTNGRQATFAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP
2	K-box	13.3	3.5e-06	145	175	47	77
K-box 47 slkeLqqLeqqLekslkkiRskKnellleqi 77 s+++L qLe+ L +sl++iRs+K++l ++++ CCG025412.1 145 SIEHLGQLENSLRESLNQIRSHKENLGKQHL 175 6899*******************99877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.983	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-25	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.93E-27	2	81	No hit	No description
PRINTS	PR00404	2.0E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.5E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGS 60 SSIEEVITKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIPEFLGTSS QTIEDLTSQS 120 RLLQNQLSDV HKRLSYWTNP DKINSIEHLG QLENSLRESL NQIRSHKENL GKQHLMSLEC 180 HTQFQNGMHV PFRMGAEQQL SPLLWIPNND SQHIMLPEEQ NLLPHGDAEC TASTSFGSYS 240 GYFGAGKHSE LSSSGQESGM NGILDELNGT ASLRLQLAGQ YPYLPGPYNL NSMNDTKFQP 300 AAEMNIQKSP GDFNVGGSFE APKPEYDSGP HGWASTSGSC AVTMFDDHLY AQGSRRWISV 360 LDDVLQLRNH TEIEFYLLFS WCSVAGQLGQ VCEITCPPDD TVGIYCIGFK LCNGEEKPEK 420 YIYLYSSTTA

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGS  60
SSIEEVITKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIPEFLGTSS QTIEDLTSQS  120
RLLQNQLSDV HKRLSYWTNP DKINSIEHLG QLENSLRESL NQIRSHKENL GKQHLMSLEC  180
HTQFQNGMHV PFRMGAEQQL SPLLWIPNND SQHIMLPEEQ NLLPHGDAEC TASTSFGSYS  240
GYFGAGKHSE LSSSGQESGM NGILDELNGT ASLRLQLAGQ YPYLPGPYNL NSMNDTKFQP  300
AAEMNIQKSP GDFNVGGSFE APKPEYDSGP HGWASTSGSC AVTMFDDHLY AQGSRRWISV  360
LDDVLQLRNH TEIEFYLLFS WCSVAGQLGQ VCEITCPPDD TVGIYCIGFK LCNGEEKPEK  420
YIYLYSSTTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	7e-14	1	91	1	90	MEF2 CHIMERA
6byy_B	7e-14	1	91	1	90	MEF2 CHIMERA
6byy_C	7e-14	1	91	1	90	MEF2 CHIMERA
6byy_D	7e-14	1	91	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013167.1	0.0	PREDICTED: MADS-box protein SVP isoform X2
Refseq	XP_011013174.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Refseq	XP_011013183.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Refseq	XP_011013188.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Refseq	XP_011013196.1	0.0	PREDICTED: MADS-box protein SVP isoform X3
Swissprot	Q1PFA4	1e-116	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A3N7FRM8	0.0	A0A3N7FRM8_POPTR; Uncharacterized protein
STRING	POPTR_0010s17450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	3e-93	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]