PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025323.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 1034aa MW: 115383 Da PI: 7.8572

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025323.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ CCG025323.1 149 VCQVEDCRADLSHAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.7E-32	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.077	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.05E-37	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-28	150	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.31E-9	799	951	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	470	801	830	IPR002110	Ankyrin repeat
Gene3D	G3DSA:1.25.40.20	8.3E-9	805	933	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.24E-7	806	918	No hit	No description
SMART	SM00248	42	858	888	IPR002110	Ankyrin repeat
SMART	SM00248	330	898	927	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MEAKMGGKSR HLYGPVLSDL KAVGKKSLEW DLNDWKWDGD LFTATPLNSV PSDCRSRQLF 60 STGPELPEKA GLSNSSSSCS DENDNLGDDK GKRELEKRRR AVFVEDEDLN DEAGSLNLKL 120 GGQVYPIMND DAKSGKKTKV TMTASNRAVC QVEDCRADLS HAKDYHRRHK VCDVHSKASK 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPENVV NEGSLNDEKG 240 SSYLLISLLR ILSNLQSNNS DQTKDQDLLS HLLRSLANLA GTTNGRSLSG LLQGSPGLVN 300 AGATVGNLEK VQDAHTNGPE SARPSSSASK KDDCINSQDL LRPLGQCGTV PVPDLVQKRI 360 LDNDVQGGLQ AHSGPQSIPL FLSRNKLPAK PNEPEATVGR IKLNKYDLNN VYDNSQDYIE 420 NLDRSHAPVS TGMGSFNCPV WLRSDSHKTN LPHMSGYSDS TPSQSPSSSS GEAQGRTDRI 480 VFKLFGKDPN DFPVALRTQI LQWLSHSPTD IESYIRPGCI ILTIYLCLEK TKWEEVCLDL 540 GASLSRLLDT FRDSFWQTGW VYVRVQNSVS FIHNGRVVLD TPLPIKSNKN CKISSITPIA 600 VSLSERTQFV VRGFNIVRPV TRVLCAVEGT YLVQETCYDL MDGAATMNEH GKPQCLNFQC 660 SVPNFVGRGF IEIEDHSLSS SFFPFIVAEP EVCSEIRMLE DAIQVAETTT DIHALAETME 720 IKNQSLDFIH EMGWLLHRSH LKFRFGQLDP NLDPFPFKRF EWLVQFSMDR DWCAVVRKLL 780 AIMIDGTVDA GEHSSIELAL FNMGLLHRAV QRNCRPMVEL LLRYTPDKQL GGPGTQQNQL 840 ADEHNSRFMF KPDVAGPAGL TPLHVAACRD GAENVLDALT DDPGLVGIDA WKRTRDNTGL 900 TPYDYACLRG HYSYIHLIQR KINKKSESGH VVLDIPSSLA DYNSKQKDGH KLPKFAVLHT 960 EKIKMKAMQQ HLKVCEQKLV YGAARPSLVY RPAMLSMVAI AAVCVCVALL FKSSPEVLYV 1020 FQPFRWEKLK YGSI

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MEAKMGGKSR HLYGPVLSDL KAVGKKSLEW DLNDWKWDGD LFTATPLNSV PSDCRSRQLF  60
STGPELPEKA GLSNSSSSCS DENDNLGDDK GKRELEKRRR AVFVEDEDLN DEAGSLNLKL  120
GGQVYPIMND DAKSGKKTKV TMTASNRAVC QVEDCRADLS HAKDYHRRHK VCDVHSKASK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPENVV NEGSLNDEKG  240
SSYLLISLLR ILSNLQSNNS DQTKDQDLLS HLLRSLANLA GTTNGRSLSG LLQGSPGLVN  300
AGATVGNLEK VQDAHTNGPE SARPSSSASK KDDCINSQDL LRPLGQCGTV PVPDLVQKRI  360
LDNDVQGGLQ AHSGPQSIPL FLSRNKLPAK PNEPEATVGR IKLNKYDLNN VYDNSQDYIE  420
NLDRSHAPVS TGMGSFNCPV WLRSDSHKTN LPHMSGYSDS TPSQSPSSSS GEAQGRTDRI  480
VFKLFGKDPN DFPVALRTQI LQWLSHSPTD IESYIRPGCI ILTIYLCLEK TKWEEVCLDL  540
GASLSRLLDT FRDSFWQTGW VYVRVQNSVS FIHNGRVVLD TPLPIKSNKN CKISSITPIA  600
VSLSERTQFV VRGFNIVRPV TRVLCAVEGT YLVQETCYDL MDGAATMNEH GKPQCLNFQC  660
SVPNFVGRGF IEIEDHSLSS SFFPFIVAEP EVCSEIRMLE DAIQVAETTT DIHALAETME  720
IKNQSLDFIH EMGWLLHRSH LKFRFGQLDP NLDPFPFKRF EWLVQFSMDR DWCAVVRKLL  780
AIMIDGTVDA GEHSSIELAL FNMGLLHRAV QRNCRPMVEL LLRYTPDKQL GGPGTQQNQL  840
ADEHNSRFMF KPDVAGPAGL TPLHVAACRD GAENVLDALT DDPGLVGIDA WKRTRDNTGL  900
TPYDYACLRG HYSYIHLIQR KINKKSESGH VVLDIPSSLA DYNSKQKDGH KLPKFAVLHT  960
EKIKMKAMQQ HLKVCEQKLV YGAARPSLVY RPAMLSMVAI AAVCVCVALL FKSSPEVLYV  1020
FQPFRWEKLK YGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	149	223	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	224	KRRRKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209103	0.0	AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011624.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_011011632.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2K1YUH6	0.0	A0A2K1YUH6_POPTR; Uncharacterized protein
STRING	POPTR_0010s16370.2	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]