PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025313.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 965aa    MW: 107699 Da    PI: 7.6636
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025313.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.59.6e-57201363118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e k+rwl+++ei++iL n++k++lt+e++ rp  gs++L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n++fqrrcy
  CCG025313.1  20 EEaKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRCY 117
                  4559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  w+L+ +le+iv+vhy+evk
  CCG025313.1 118 WMLDGQLEHIVFVHYREVK 136
                  ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70815141IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-8118136IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-5021134IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.8E-6440499IPR014756Immunoglobulin E-set
PfamPF127965.6E-7594678IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.12E-15600709IPR020683Ankyrin repeat-containing domain
CDDcd002046.14E-15604707No hitNo description
Gene3DG3DSA:1.25.40.202.3E-16607739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.547615728IPR020683Ankyrin repeat-containing domain
SMARTSM002481900615644IPR002110Ankyrin repeat
SMARTSM002480.0016648677IPR002110Ankyrin repeat
PROSITE profilePS5008810.312648680IPR002110Ankyrin repeat
SMARTSM002483100687716IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-8817873IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.45822844IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627823852IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042824843IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633846870IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5849867IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MAETRRYIPD HTINIEQILE EAKHRWLRPT EILEILRNYQ KFKLTAEPPA RPAAGSMFLF  60
DRKALRYFRK DGHRWRKKKD GKTVREAHEK LKAGSVDVLH CYYAHGEDNE NFQRRCYWML  120
DGQLEHIVFV HYREVKEGYK SGVSRLLEDS GTQVENLQPS PATSVAQAAS PASTVQTSYA  180
SSPNRIDWNG KALSSEFEDV DSRNGPGTSS LSQSIHGSMS HNSSLLSPRV EGFHVLPKNP  240
PGSWLAGAKF DHGTQSSLLP EISSSERSVS ILPGQNFFVG QPHGAEFITH KLTDATLEGI  300
AVPDTVVGET GLITDRTATP QNVIQELDFN LISPQLHNLS GTQTVAASTA QVENKTNDGG  360
ANNIESGELK KLDSFGRWMD KEIGGDCDDS LMASDSGNYW STLSAENEDK EVSSLSHHMQ  420
LDIDSLGPSL SQDQLFSIRD FSPDWAYSGV DTKIEVSAEV LNDCVIRCQV PQHAPGRVPF  480
YVTCRNRLSC SEVREFEYRE NPSGTASLPA ESGQQEEILF QMRLSKLLYL GPGMKSLNCS  540
IEDCERCKIR STLFSLRNDS KRDLGKVQDN CLVALGDGIG FRDKLIQSLL MDRLCEWLAC  600
KVHEGGKGPD VLDGEGQGVI HLAASLGYEW AMDLIVAASG NPNFRDARGR TALHWASYFG  660
REQTVIALIR LDADPTAVDD PTPAFPGGQS AADLASCRGH KGISGYLAEA FLSRHLLSLN  720
IDQNEMDHDT AAMAAEKETD IAAQVASLSS KGEYELLSLK GSLAAVRKSA RAVALIHAAY  780
RTSSFRQRQL AKSSDDISEI SLDLAALGSL HMVQRRGHFE DYLHSAAVKI QQKYRGWKGR  840
KDFLKIRNRI VKIQAHVRGH QVRKQYKKVV WSVGIVEKAI LRWRRKRTGL RGFRLEKKIG  900
DVKPESEKAD EYDFLRLSRK QKFAGVEKAL ARVTSMVRNP EAREQYMRMV TKFENIKVML  960
YSSEH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1461870.0EF146187.1 Populus trichocarpa clone WS0116_B03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011482.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X3
TrEMBLA0A2K1YUG00.0A0A2K1YUG0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1