PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025238.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 561aa    MW: 63495.4 Da    PI: 4.6811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025238.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2969.8e-911875563374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlta 98 
                  e +l+ Ae v +++   a++lL++    +s++g+p+qR++ yf eAL++r+ r++ +++++   se  + +  +     + ++ +e  P++++ h++ 
  CCG025238.1 187 ECMLASAEKVGNQQYDSARRLLNQCDLWSSNTGNPVQRIVYYFSEALRKRIDRETGKVASQGLESELFDVDeaVMIPNPIIQACYEGIPFYQVPHFAG 284
                  567889999********************************************7777766664444443331222223345779************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   qaIle ++g++r+H+iD+ is+GlQW  L++aLasR+e p   l+iT+vg    +sk+ +e tg+rL++fA+++++pf+f++++++++ dl+ + ++
  CCG025238.1 285 TQAILENMAGAKRIHVIDLKISNGLQWTVLMHALASRNECPLeLLKITAVGT---NSKQHIEDTGKRLKSFAQTTNIPFSFEIVMVSSMLDLKEDLFE 379
                  **************************************7665499*******...589**************************************** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgr 292
                  ++ +E laV + ++l++l  ++ +     d+++k+++s++P v+v++e ea+hns  F++rf+e+l y+sa fd+++a + +++ + r+ +E  +lg+
  CCG025238.1 380 LDADEQLAVYSEYALKSLIVQPNQ----LDHLMKVFRSINPCVLVMIEIEANHNSRVFVHRFIETLFYFSAYFDCVDACVEHNDsSSRMIIESIYLGE 473
                  ******************955544....566*********************************************9999877669************ PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   i+n+va eg+err r+ +   Wr+ l ++G+ + +lse    qa+ +++k++ +   +   +++sl++gWk+ p++s+S W+
  CCG025238.1 474 GIRNIVASEGEERRIRNVKIDAWRKFLARFGMVETELSEASLHQANFVIKKFAcGSCCTFVIDRKSLLIGWKGTPILSLSTWK 556
                  *****************************************************99999************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.723159535IPR005202Transcription factor GRAS
PfamPF035143.4E-88187556IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEGMNRGKYD KDDWEEFGTG SDDCFSSDNV LPHKDSSEGG CRSSKFEQLE QQKEPFLDYR  60
QFEDLELDVL CPPLPACPNQ IAMLREIQEE VEDIVAPMTQ NESPFSVSIL ELLKDYTAGR  120
RRLSVEPSDA NLVGQKLSTE EIMRFAGVKF IQSSIQKAGV GSLLKYPCDL SFSGLSDEEI  180
KNVELAECML ASAEKVGNQQ YDSARRLLNQ CDLWSSNTGN PVQRIVYYFS EALRKRIDRE  240
TGKVASQGLE SELFDVDEAV MIPNPIIQAC YEGIPFYQVP HFAGTQAILE NMAGAKRIHV  300
IDLKISNGLQ WTVLMHALAS RNECPLELLK ITAVGTNSKQ HIEDTGKRLK SFAQTTNIPF  360
SFEIVMVSSM LDLKEDLFEL DADEQLAVYS EYALKSLIVQ PNQLDHLMKV FRSINPCVLV  420
MIEIEANHNS RVFVHRFIET LFYFSAYFDC VDACVEHNDS SSRMIIESIY LGEGIRNIVA  480
SEGEERRIRN VKIDAWRKFL ARFGMVETEL SEASLHQANF VIKKFACGSC CTFVIDRKSL  540
LIGWKGTPIL SLSTWKFMPQ D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3821555633375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495420.0AC149542.1 Populus trichocarpa clone Pop1-2C5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015694.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLB9HWZ80.0B9HWZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-56RGA-like 2