PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025237.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 489aa    MW: 54923.3 Da    PI: 5.3907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025237.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.66.3e-911174871374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                  l++ L++ Ae v ++++  ++++L+   +++s +g+p+qR++ yft AL++r+ r++ ++      + +s+ +  +++   a    ++  P+ ++++l
  CCG025237.1 117 LIQFLIASAEKVGQQQFDDVSEMLSMCDQMSSATGNPVQRIVYYFTGALRERIDRETGKITPRGLFTISSNVEeaMVSLSPAILECHQRMPFCQIAQL 214
                  5789***************************************************6666665443333332221134444444449999********* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  t  qaI+e+++ ++r+H+iD+ i +G+QW+aL+qaLa+R+  ++  l+iT++g    +s  +++etg+rLa+fAe++++pf+fn++++ +++dl+ e+
  CCG025237.1 215 TGIQAIVESAADAKRIHVIDLKIDYGVQWIALMQALAARNdCPTELLKITAFGT---TSMSKIQETGKRLAQFAETVNLPFSFNIVMVLNINDLKKES 309
                  ****************************************4455599*******...689**************************999********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++++ gE +aV ++l l++ll ++++les    +++++++l+P+++v++e ea+hns+ F +rf+e+l y+sa+fd+lea + r +  r+  E  +l+
  CCG025237.1 310 FELEDGEFIAVYSSLFLKNLLTQPHCLES----LMRVIRDLRPQIMVITEPEANHNSQAFKDRFVETLLYFSAIFDCLEACMDRSDPSRMGAEGLYLS 403
                  *****************************....***************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +i+n++a+eg+er+ ++ +   Wr+ l e+G+++ +ls +   qa  +++k++ +   +++ + ++l++gWk+ p+ s+S+W+
  CCG025237.1 404 YAIKNIIAKEGKERTFECVKIDYWRAYLAEFGMEETELSMTSLYQAIQVVKKFAcGSYCTLDMNGKCLIIGWKGTPINSLSVWK 487
                  ******************************************************8777899999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.14791466IPR005202Transcription factor GRAS
PfamPF035142.2E-88117487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGFHCPGLET KGKSHLKPQS LGEGKGNQAS FSLEAFQVLK QYEKRVKHLN KEKLEEPSNI  60
IECNSANVLA LSTEEIIKVA TATSLEYHLQ RSDNLPSLSF GCAPYDLTSD GVKYVELIQF  120
LIASAEKVGQ QQFDDVSEML SMCDQMSSAT GNPVQRIVYY FTGALRERID RETGKITPRG  180
LFTISSNVEE AMVSLSPAIL ECHQRMPFCQ IAQLTGIQAI VESAADAKRI HVIDLKIDYG  240
VQWIALMQAL AARNDCPTEL LKITAFGTTS MSKIQETGKR LAQFAETVNL PFSFNIVMVL  300
NINDLKKESF ELEDGEFIAV YSSLFLKNLL TQPHCLESLM RVIRDLRPQI MVITEPEANH  360
NSQAFKDRFV ETLLYFSAIF DCLEACMDRS DPSRMGAEGL YLSYAIKNII AKEGKERTFE  420
CVKIDYWRAY LAEFGMEETE LSMTSLYQAI QVVKKFACGS YCTLDMNGKC LIIGWKGTPI  480
NSLSVWKFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3812548626377Protein SCARECROW
5b3h_D2e-3812548626377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495420.0AC149542.1 Populus trichocarpa clone Pop1-2C5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015686.10.0PREDICTED: DELLA protein RGL2-like
TrEMBLA0A2K1YTY70.0A0A2K1YTY7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-61RGA-like 1