PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025222.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CAMTA

Protein Properties

Length: 938aa MW: 105668 Da PI: 7.4621

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025222.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162	1e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n+tf rrcy CCG025222.1 30 EEsRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQTFVRRCY 127 4459******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 wlL+++le+ivlvhy+e++ CCG025222.1 128 WLLDKSLEHIVLVHYRETQ 146 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.322	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.4E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.96E-8	376	476	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.33E-15	557	684	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.6E-16	574	687	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.9E-7	574	654	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-17	575	687	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.884	592	684	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.701	625	657	IPR002110	Ankyrin repeat
SMART	SM00248	4.0E-6	625	654	IPR002110	Ankyrin repeat
SMART	SM00248	4600	664	694	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.65E-6	735	839	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	36	788	810	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.364	789	818	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.4E-4	811	833	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.615	812	836	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.8E-4	815	833	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	63	891	913	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.053	893	921	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MESRFPDRLI GSEIHGFHSL RDLDVLNIME ESRTRWLRPN EIHAMLCNYK YFTINVKPVN 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNQ 120 TFVRRCYWLL DKSLEHIVLV HYRETQEGSP ATPVNSHSSS VSDQSAPRLL SEEFDSGAAS 180 AYDSSEKDLG SSDSLTVRSH AMKLHELNTL EWDELVTNDP GNLIPPGRDK IPCFDGQNRI 240 AVNGSVNDGG ILSGYHLSAE MSTLDNLTES IVRGGNTQFN SPDNVYSQLT SAQVNSDAQR 300 KGSIVPGTSD SLNNLFNDGL QSQDSFGRWM SSIIDHSPCS VDDAVLESSI SSGHDSFASP 360 GIDQHQSSVQ EQTFIITDFS PAWAFSNETT KVYFLFIQSS VAIPVILVTG YFHEQYQHLA 420 KSNLFCICGD AFVRAEIVQV GVYSCMLPSH SPGLVNLCLS LDGLESTSQI LNFEYRAPSV 480 HDPVVSSEDK SKWEEFHLQM RLAYLLFSTS KTLDVVSNKL SLTNLKEAKK FALKTSNISN 540 SWAYLIKAIE DGGISVAQAK DGFFELYLKN KIKEWLLERV LEGCKTTGYD AQGLGVIHLC 600 AIIGYTWAVY LFSWSGLSLD FRDKHGWTAL HWAAYYGREK MVGALLSAGA KPNLVTDPTK 660 ENPGGCTPAD LASAKGYDGL AAYLSEKALV AQFESMITAG NVTGSLPTTA TNTVNSENLS 720 EEELYLKDTL AAYRTVADAA ARIQVAFREH SLKVRTKAVQ SSSPEDEARN IIAAMKIQHA 780 FRNYDSKKKM AAAARIQHRF RSWKMRRDFL NMRHKTIKIQ AAFRGFQVRR QYRKIIWSVG 840 VVEKAILRWR LKRRGFRGLR VEPVEAVVDQ GHDSDTEEDF YKISQKQAEE RVERSVIRVQ 900 AMFRSKKAQE EYWRMKLTHS QAKVEYEGLL DPDMNVDK

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MESRFPDRLI GSEIHGFHSL RDLDVLNIME ESRTRWLRPN EIHAMLCNYK YFTINVKPVN  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNQ  120
TFVRRCYWLL DKSLEHIVLV HYRETQEGSP ATPVNSHSSS VSDQSAPRLL SEEFDSGAAS  180
AYDSSEKDLG SSDSLTVRSH AMKLHELNTL EWDELVTNDP GNLIPPGRDK IPCFDGQNRI  240
AVNGSVNDGG ILSGYHLSAE MSTLDNLTES IVRGGNTQFN SPDNVYSQLT SAQVNSDAQR  300
KGSIVPGTSD SLNNLFNDGL QSQDSFGRWM SSIIDHSPCS VDDAVLESSI SSGHDSFASP  360
GIDQHQSSVQ EQTFIITDFS PAWAFSNETT KVYFLFIQSS VAIPVILVTG YFHEQYQHLA  420
KSNLFCICGD AFVRAEIVQV GVYSCMLPSH SPGLVNLCLS LDGLESTSQI LNFEYRAPSV  480
HDPVVSSEDK SKWEEFHLQM RLAYLLFSTS KTLDVVSNKL SLTNLKEAKK FALKTSNISN  540
SWAYLIKAIE DGGISVAQAK DGFFELYLKN KIKEWLLERV LEGCKTTGYD AQGLGVIHLC  600
AIIGYTWAVY LFSWSGLSLD FRDKHGWTAL HWAAYYGREK MVGALLSAGA KPNLVTDPTK  660
ENPGGCTPAD LASAKGYDGL AAYLSEKALV AQFESMITAG NVTGSLPTTA TNTVNSENLS  720
EEELYLKDTL AAYRTVADAA ARIQVAFREH SLKVRTKAVQ SSSPEDEARN IIAAMKIQHA  780
FRNYDSKKKM AAAARIQHRF RSWKMRRDFL NMRHKTIKIQ AAFRGFQVRR QYRKIIWSVG  840
VVEKAILRWR LKRRGFRGLR VEPVEAVVDQ GHDSDTEEDF YKISQKQAEE RVERSVIRVQ  900
AMFRSKKAQE EYWRMKLTHS QAKVEYEGLL DPDMNVDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	0.0	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009959.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011009967.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	B9HWX4	0.0	B9HWX4_POPTR; Uncharacterized protein
STRING	POPTR_0010s15160.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]