PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025175.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 571aa    MW: 61223.5 Da    PI: 5.5435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025175.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09378426355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  CCG025175.2 378 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 426
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-11373430No hitNo description
PROSITE profilePS5088815.485375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16376442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6378426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDMSDKDKFE LEKSNDNPTN YHSSGGLSSD WRFNSTSIPN SSLGLVPIDN QMSVCRGDLV  60
GAASCSSASV IDSFGPAMWE HPTNSQNLVF CDINVQNIAS SSNTAGIGKG VPASLRNGID  120
RTLEMGWNPP NSMLKGGIFL PNAPGVLPQS LSQFPADSAF IERAARFSCF NGGDFGDMVN  180
PFGVPESMGL FSRGGGMMQG PGEVFVGSGM KSVSGGQSQK NVMNAGEASK DISMSVDHMA  240
TEGSPLKNET KRESLARSRD EAKKGLGGSS NDSDEAEFSG GSGQDEPSML EGNCGELSAK  300
SLGSKKRKRS GEDAELDQAK GTPQSAKGSP ETQQKGDQKP TSTTSKAGGK QGKQGSQGSD  360
QPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDFNIEGL LAKDVSISQF FILILQSRAL PPSSLAFSSE  480
MPMAYPALHQ SQPGLIPTAF PGMESHSDII RRTINSQLTT MTAGFKEPAQ LPNVWDDELH  540
NVVQMTYGTS APQDSQDVNE PLPPAHLKVE L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309KKRKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468110.0EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009204.10.0PREDICTED: transcription factor bHLH49
TrEMBLB9HWS90.0B9HWS9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-130bHLH family protein