PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG025130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 472aa MW: 52970.1 Da PI: 9.341 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 158.5 | 3.6e-49 | 104 | 261 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg... 88 +gkkdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt+t s + +a++s+ss+s+ + CCG025130.1 104 TGKKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAAIKELTDTvpkvrkcsS-T-----SAGKSVSSTSE---Sevv 192 79**************************************************************655544421.1.....33333333332...1223 PP TCP 89 ....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 ++ s++++kks+k ++ + n+ + esr+kararar+rtrekm++k + CCG025130.1 193 sgikltpdtngdrrvmeaksDSLVSKPQEKKSKKVHKPVFNPVDrESREKARARARDRTREKMKNKGIN 261 555566667777888888774444444333333333333555555********************9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-48 | 104 | 257 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 38.019 | 106 | 164 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.188 | 237 | 254 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MIASTLADPE NPSSIEDYSP TSFLQHFPDL FLNDDDLLVG ELLSQQQQQQ QQPGVFGSNT 60 HVLAVETQEI NPVASNDEST RKFNNSKMKG NVNTSKQPIR QRRTGKKDRH SKIHTAQGPR 120 DRRMRLSLQI ARKFFDLQDM LGFDKASKTI EWLFTKSKAA IKELTDTVPK VRKCSSTSAG 180 KSVSSTSESE VVSGIKLTPD TNGDRRVMEA KSDSLVSKPQ EKKSKKVHKP VFNPVDRESR 240 EKARARARDR TREKMKNKGI NKSSQSSQAN PDNLEKFGYS STLEYGENLA SGRQEINSSV 300 KVVDEEEESN NHHHLLPHQM DHVSIIDKFF GITNSPRSSS IFDFSESVEV PSGATLKDEF 360 SGFPLKWDVT NGRVQYKYNA LPNMKLPSGN VQAQNPNANF MTTPHALEQN LSTMIMTTLN 420 AHVEESPNSA FMSMPNPNEQ NPISILKTTT AIDNGNQFSS SHIFARDYDR LY |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU129192 | 0.0 | GU129192.1 Populus balsamifera TCP transcription factor (TB2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008633.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A2K1YTC7 | 0.0 | A0A2K1YTC7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s14030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-32 | TCP domain protein 12 |