PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024918.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YB

Protein Properties

Length: 196aa MW: 21666.6 Da PI: 4.5933

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024918.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	75.1	1e-23	50	132	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al lGf +y+e + + CCG024918.1 50 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEDVYT 132 6899**************************************************************************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-37	47	179	IPR009072	Histone-fold
SuperFamily	SSF47113	9.35E-33	51	179	IPR009072	Histone-fold
Pfam	PF00808	2.8E-21	53	118	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MPPFLLLISH STNTAITRTC KYGSESADWV SPLGLKDLTM EPMDIVGKSK EDASLPKATM 60 TKIIKEMLPP DVRVARDAQD LLIECCVEFI NLVSSESNEV CSREDKRTIA PEHVLKALQV 120 LGFGEYIEDV YTAYEQHKLE TMHDSLKGGG KWSTGAAMTE EEAAAAQQRM FDEARARMNG 180 VVSAPKQPET NESLES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-30	51	175	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008956.1	1e-113	PREDICTED: protein Dr1 homolog
Refseq	XP_011008957.1	1e-113	PREDICTED: protein Dr1 homolog
Swissprot	P49592	1e-88	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	B9I2N5	1e-110	B9I2N5_POPTR; Uncharacterized protein
STRING	POPTR_0012s05470.1	1e-111	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4766	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	8e-84	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]