PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024910.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YA

Protein Properties

Length: 227aa MW: 25064.2 Da PI: 9.8931

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024910.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.1	1.1e-31	71	127	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF CCG024910.1 71 DGPIYVNAKQYRGIIRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHALNRVRGSGGRF 127 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.0E-35	69	130	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.869	70	130	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.8E-23	73	95	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.1E-27	73	127	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	75	95	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.8E-23	104	127	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKPVLLLSTP DSVSNHSQAD CSYSMVRAPH ADPYFGGLFN PYELHAFPHL GSHMVGMTAG 60 RVPLPVDLAD DGPIYVNAKQ YRGIIRRRQS RAKLEAQNKL VKNRKPYLHE SRHIHALNRV 120 RGSGGRFLSK KKLQESDPTP SQCNVTDTIH SHVKNDASEL ESYQSGTGQS GASNTTCSDI 180 TSVSYSNVTF RQPERRFSGI ATHLGGGMEI NSRLICRGTQ HHTSVVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	71	132	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213015	0.0	AC213015.1 Populus trichocarpa clone POP034-G19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003464.1	1e-170	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBL	A0A2K1WWT4	1e-162	A0A2K1WWT4_POPTR; Uncharacterized protein
TrEMBL	A0A2K1WWU9	1e-162	A0A2K1WWU9_POPTR; Uncharacterized protein
STRING	POPTR_0018s07220.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	4e-51	nuclear factor Y, subunit A3