PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024901.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 502aa MW: 55005.7 Da PI: 5.996

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024901.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.3e-40	137	197	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s CCG024901.1 137 PDKILPCPRCKSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 197 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	124	194	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	139	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	141	195	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	143	179	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MLEPRDPAIK LFGKTIQVTE ISSTTTTDND DSQDQDRPSC ASSSLCDTDS DNNKRDHGEE 60 DIEADDKDSV EKSLTEKQED GVSPVAAEEP SNPDANSRTS ENPKTPSIEK ESEGLQTLRT 120 EEHSDTSNSQ EKTLKKPDKI LPCPRCKSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKNSASHY RHITIPEALQ NVRADVPNGV YHPSMKTNGT VLTFGSDTPL 240 HESMASVLNL ADKTTRNCTR NVSHKPDAVR IPVSYGSGEN GDDHSNGSSV TVSNSIDEAG 300 KSMSKESAMQ NCQGFTPEIP CFPGVPWPYP WNSAQWSSPL PPPAFCPPGF PMPFYPAAAY 360 WGCTVPGAWN IPWLPQSSSP KQASLSSSPN SPTLGKHSRD ENVLKSSNSE EGESAKENNT 420 ERCLWIPKTL RIVDPGEAAK SSIWTTLGIK NDKPDLIGGR GLFKAFESKV EKNHGAETSP 480 VLQANPAALS RSLKFQESSY FG

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MLEPRDPAIK LFGKTIQVTE ISSTTTTDND DSQDQDRPSC ASSSLCDTDS DNNKRDHGEE  60
DIEADDKDSV EKSLTEKQED GVSPVAAEEP SNPDANSRTS ENPKTPSIEK ESEGLQTLRT  120
EEHSDTSNSQ EKTLKKPDKI LPCPRCKSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKNSASHY RHITIPEALQ NVRADVPNGV YHPSMKTNGT VLTFGSDTPL  240
HESMASVLNL ADKTTRNCTR NVSHKPDAVR IPVSYGSGEN GDDHSNGSSV TVSNSIDEAG  300
KSMSKESAMQ NCQGFTPEIP CFPGVPWPYP WNSAQWSSPL PPPAFCPPGF PMPFYPAAAY  360
WGCTVPGAWN IPWLPQSSSP KQASLSSSPN SPTLGKHSRD ENVLKSSNSE EGESAKENNT  420
ERCLWIPKTL RIVDPGEAAK SSIWTTLGIK NDKPDLIGGR GLFKAFESKV EKNHGAETSP  480
VLQANPAALS RSLKFQESSY FG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008971.1	0.0	PREDICTED: cyclic dof factor 3-like
Refseq	XP_011013651.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A2K2ATH1	0.0	A0A2K2ATH1_POPTR; Uncharacterized protein
STRING	POPTR_0004s12120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-98	cycling DOF factor 3