PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024892.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 452aa    MW: 48920.6 Da    PI: 8.1689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024892.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-115075126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++ + C +f+rtG+C yG++C+++H+
  CCG024892.1 50 PGVPDCGYFLRTGFCGYGSNCRYNHP 75
                 5789*********************8 PP
2zf-CCCH33.85.5e-1194118327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C ++ +tGtCkyG++Ck++H++
  CCG024892.1  94 QPDCGYYIKTGTCKYGSTCKYHHPR 118
                  789********************96 PP
3zf-CCCH30.18.1e-10140163427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C+++ rt  Ck+G  CkF+H++
  CCG024892.1 140 KSCPYYTRTRSCKFGVACKFHHPQ 163
                  56********************97 PP
4zf-CCCH34.63.1e-11289314227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+ +GtCkyG+ Ck++H++
  CCG024892.1 289 DQPECRHFMSSGTCKYGSDCKYHHPK 314
                  689*********************96 PP
5zf-CCCH322.1e-10335359226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C++++ +G+Ck+G++C++ H+
  CCG024892.1 335 GQAVCPDYSMYGICKFGPTCRYDHP 359
                  7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7514977IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-64976IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-55476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-45574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.97691119IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-491118IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-894118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-696119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-497118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.681136164IPR000571Zinc finger, CCCH-type
SMARTSM003560.11138163IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7139163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399287315IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5287314IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9289314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6290316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5293314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037333361IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7333360IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7335359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAD NIEEAFWRLK IHDPQEQGGM AQSSPYPDRP GVPDCGYFLR  60
TGFCGYGSNC RYNHPIYAAQ GTQLREELPE RIGQPDCGYY IKTGTCKYGS TCKYHHPRDR  120
NGAGPVSFNV LGLPMRQDEK SCPYYTRTRS CKFGVACKFH HPQPASLGTS LPLTGAAAFG  180
STGSPIVPSS GLPYVGGLPT WSLPRAPPYM SGTHLQGPQA YMPVVVSPPQ GIVPVPGWNT  240
YVGNSNPMSS SSILGSSRAY DSRNHGDSGS SGQAHLLSAA IPALPERPDQ PECRHFMSSG  300
TCKYGSDCKY HHPKERIAQL ATSTMGPFGL PLRPGQAVCP DYSMYGICKF GPTCRYDHPL  360
PTYPYSYSLS LPSLSMRDSS LVTYPRMAQA ALSSATPVSL SKLPDLIRNP DGASYNKHQN  420
SDSNTKTLDD PTEHAGSPPP HSSQASSEPS HD
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008920.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-116C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9GTS90.0B9GTS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-116C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]